search

MLforHealth / MIMIC_Extract

MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III
MIT License
415 stars 122 forks source link

Missing Library #17

Open bbardakk opened 5 years ago

bbardakk commented 5 years ago

I am trying to run Baselines for Mortality and LOS prediction - GRU-D notebook but the from mmd_grud_utils import * line gives exception.

Could you please share this library ?

singhalrk commented 4 years ago

I am also trying to run this notebook. But I get the following error:

ModuleNotFoundError: No module named 'mmd_grud_utils'

fengx13 commented 4 years ago

same problem. Thanks for sharing

mmcdermott commented 4 years ago

Sorry about this, folks, both the missing lib file and the long delay; big oversight on our side. We've pushed the missing library file now, but I'm not going to close the issue until I've had a chance to go through and fully validate the notebook now - we just pushed a new branch of the code with some new features, so we may need to adjust this example notebook slightly to account for that. Please respond here if you have urgent need of an updated copy of the notebook, and I'll appropriately prioritize things.

mmcdermott commented 4 years ago

Just noting this is is still on our radar - we've pushed a bunch of other smaller fixes to other things, and made a version of the output available for download via GCP, but weren't able to check that the library integrates properly as of yet. Especially with support for MIMIC-IV on our list, I'm not sure when we'll get to this but it is tracked.