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MMAP / MMAP-releases-issues-Q-and-A

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I got a "Segmentation fault (core dumped)" error #5

Closed sharonxup6 closed 2 years ago

sharonxup6 commented 2 years ago

I'm running a GWAS with MMAP. I think I followed the instructions and it still doesn't work. The message shows "Segmentation fault (core dumped)." Where should I modify it? Thank you. Here is my code:

cd ~/pathway/to/files/ /usr/local/MMAP/mmap \ --ped my_ped.bin \ --read_binary_covariance_file my_ped.bin \ --phenotype_filename my_phe.csv \ --trait ln_Ab \ --covariates AGE PC1 PC2 PC3 \ --gxe_interaction AGE \ --binary_covariate_filename ~/PROJ/GWAS/mmap_allchr.bin \ --binary_genotype_filename ~/PROJ/GWAS/mmap_allchr.bin \ --file_suffix ./output/ln_Ab

jeffoconnell496 commented 2 years ago

The --gxe_interaction option is no longer supported in MMAP. I suggest you consider GEM or LinGxEScanR

sharonxup6 commented 2 years ago

I see. Thank you for your response and suggestions.

jeffoconnell496 @.***> 於 2022年5月10日 週二 上午9:39寫道：

Closed #5 https://github.com/MMAP/MMAP-releases-issues-Q-and-A/issues/5.

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