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MMARINeDNA / Valdiviaetal_2D-eDNA-spatial-distributions

This repository contains the code used to create large-scale 2D distributions of eDNA from three marine mammal species using a GAM approach. The associated manuscript is currently in preparation for publication.
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Dataframe indexing off by 1? #4

Open eirenjacobson opened 5 months ago

eirenjacobson commented 5 months ago

I think the indexing in lines 33:40 may be off by 1? I changed it to

Laob.unique_083_F <- Laob.unique_083_F_A %>% dplyr::select(c(40,25:27,41:57))

Meno.unique_083_F <- Meno.unique_083_F_A %>% dplyr::select(c(40,25:27,41:57))

Grgr.unique_083_F <- Grgr.unique_083_F_A %>% dplyr::select(c(40,25:27,41:57))

And the models ran.

Also note that Step2 creates an object md.taxa.long.formated.env083 but Step3 loads and uses md.taxa.long.formated.env083.uniq<-read.csv("./dataframes/md.taxa.long.formated.env083.uniq.csv"). Should these be the same? Where is the .uniq version created?

taniavaldiviac commented 2 months ago

I have added code to create md.taxa.long.formated.env083.uniq. Thanks!