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MMARINeDNA / metabarcoding_QAQC_pipeline

Pipeline scripts for initial quality control, ASV assignment, taxonomic classification, and preliminary data visualization
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Sedna version #1

Closed avancise closed 1 year ago

avancise commented 1 year ago

Make a version of the QAQC pipeline that runs automatically in Sedna. Ideally, this pipeline will automatically pull the sequences from the QNAP, move them to Sedna, process, then delete the sequences from their temporary location.

alexandriai168 commented 1 year ago

done! 2 inputs when you start the job (no more interactive mode) and removes intermediate files as the pipeline runs