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MMARINeDNA / metabarcoding_QAQC_pipeline

Pipeline scripts for initial quality control, ASV assignment, taxonomic classification, and preliminary data visualization
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missing file `primer_test_phyloseq.Rdata` #16

Closed invertdna closed 1 year ago

invertdna commented 1 year ago

line 59 of the shell script refers to primer_test_phyloseq.Rdata, but that file appears to be missing.

alexandriai168 commented 1 year ago

this error occurred because the .qmd file was pulling from a metadata file that was hardcoded. Just added new code that pulls from Hake_2019_metadata.csv and the MiSeq sample sheet to make this metadata.csv file. The qmd should now be able to make the phyloseq Rdata.