search

MMARINeDNA / metabarcoding_QAQC_pipeline

Pipeline scripts for initial quality control, ASV assignment, taxonomic classification, and preliminary data visualization
0 stars 3 forks source link

Remove filter from FilterandTrim step in dada2 #7

Closed avancise closed 1 year ago

avancise commented 1 year ago

If we filter in cutadapt, we should not filter again in dada2

alexandriai168 commented 1 year ago

Hello! Just removed it (set trimLeft and truncLen to 0 and then kept the other parts (such as maxN, maxEE, etc.)