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MOZI-AI / annotation-scheme

Human Gene annotation service backend
GNU General Public License v3.0
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The find-genes function requires a fix #187

Closed tanksha closed 4 years ago

tanksha commented 4 years ago

There is a potential issue with the find-genes function. It is supposed to do the following

Before we do the annotation for a given list of genes, we look for the gene:

=> if the genes exist in the atomSpace, proceed to do the annotations

=> If not (i.e one or more genes in the list doesn't exist in the atomspace), then

a) Check if the gene symbol is outdated and suggest the user to use the current symbol. or/and b) Suggest the user for similar gene symbols (matching the name)

But am getting gene doesnt exist message whether the gene has outdated symbol or there are similar named genes. The message is not the same when I try it with list of genes and with just a one gene. Here are the list of genes I tried with SLC35E2, MROH7, MROH7-TTC4, DUSP13, AC078925.1, NDUFA11, TUBGCP6, HDAC6, PSPH, PHF2,DMD

With the whole bio-atomspace loaded

Habush commented 4 years ago

@tanksha please check if this issue still persists

tanksha commented 4 years ago

it has been fixed, closing it.