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MOZI-AI / knowledge-import

Import scripts for the Bio-Atomspace
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pharamagkb import #7

Closed noskill closed 4 years ago

noskill commented 4 years ago

example - part of https://www.pharmgkb.org/pathway/PA166104634

substances are added both as PubChem and ChEBI(if such id is available)

(EvaluationLink
    (PredicateNode "has_name")
    (ListLink
        (ConceptNode "PA165860384")
        (ConceptNode "Lamivudine Pathway, Pharmacokinetics/Pharmacodynamics")))
(MemberLink
    (GeneNode "GUK1")
    (ConceptNode "PA166104634"))
(MemberLink
    (MoleculeNode "Uniprot:B4E1H6")
    (ConceptNode "PA166104634"))
(MemberLink
    (MoleculeNode "Uniprot:Q16774")
    (ConceptNode "PA166104634"))
(MemberLink
    (MoleculeNode "Uniprot:Q6IBG8")
    (ConceptNode "PA166104634"))
(MemberLink
    (GeneNode "HLA-B")
    (ConceptNode "PA166104634"))
(MemberLink
    (GeneNode "UGT")
    (ConceptNode "PA166104634"))
(MemberLink
    (GeneNode "ADH1B")
    (ConceptNode "PA166104634"))
(MemberLink
    (MoleculeNode "Uniprot:P00325")
    (ConceptNode "PA166104634"))
(MemberLink
    (GeneNode "HIV-RT")
    (ConceptNode "PA166104634"))
noskill commented 4 years ago

all converted pathways https://gist.github.com/noskill/1ee967b78d28e2e07c742d9e2485c80b

mjsduncan commented 4 years ago

@tanksha can we merge this and open up an issue on integrating @noskill 's semantics into the current bio-atomspace and also make it available for discussing in issue #10 refectoring the bio-atomspace senamtics