Open wsatbluesky opened 4 months ago
OS Version: Rocky Linux 8.9
Hi, when i use pip --default-timeout=1000 install 'cryolo[c11]' install latest cryolo，it gives error like below：
pip --default-timeout=1000 install 'cryolo[c11]'
(cryolo) [root@localhost tmp]# pip --default-timeout=1000 install 'cryolo[c11]' Collecting cryolo[c11] Downloading cryolo-1.9.9.tar.gz (208 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 208.8/208.8 kB 778.4 kB/s eta 0:00:00 Preparing metadata (setup.py) ... done Collecting mrcfile>=1.3.0 (from cryolo[c11]) Downloading mrcfile-1.5.0-py2.py3-none-any.whl.metadata (6.9 kB) Collecting Cython (from cryolo[c11]) Downloading Cython-3.0.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.2 kB) Collecting Keras==2.3.1 (from cryolo[c11]) Downloading Keras-2.3.1-py2.py3-none-any.whl.metadata (2.2 kB) Requirement already satisfied: numpy<1.19.0,>=1.16.0 in /opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages (from cryolo[c11]) (1.18.5) Collecting h5py<3.0.0,>=2.5.0 (from cryolo[c11]) Downloading h5py-2.10.0-cp38-cp38-manylinux1_x86_64.whl.metadata (2.0 kB) Collecting imageio<=2.15.0,>=2.3.0 (from cryolo[c11]) Downloading imageio-2.15.0-py3-none-any.whl.metadata (4.1 kB) Requirement already satisfied: Pillow>=6.0.0 in /opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages (from cryolo[c11]) (9.4.0) Collecting tifffile==2020.9.3 (from cryolo[c11]) Downloading tifffile-2020.9.3-py3-none-any.whl.metadata (23 kB) Collecting networkx (from cryolo[c11]) Downloading networkx-3.1-py3-none-any.whl.metadata (5.3 kB) Collecting scipy>=1.3.0 (from cryolo[c11]) Downloading scipy-1.10.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (58 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.9/58.9 kB 2.3 MB/s eta 0:00:00 Collecting terminaltables (from cryolo[c11]) Downloading terminaltables-3.1.10-py2.py3-none-any.whl.metadata (3.5 kB) Collecting lineenhancer==1.0.9.dev2 (from cryolo[c11]) Downloading lineenhancer-1.0.9.dev2.tar.gz (5.5 kB) Preparing metadata (setup.py) ... done Collecting cryoloBM>=1.5.1 (from cryolo[c11]) Downloading cryoloBM-1.6.1.tar.gz (361 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 361.9/361.9 kB 2.1 MB/s eta 0:00:00 Preparing metadata (setup.py) ... done Collecting ansi2html (from cryolo[c11]) Downloading ansi2html-1.9.1-py3-none-any.whl.metadata (3.7 kB) Collecting GooeyDev>=1.0.8b5 (from cryolo[c11]) Downloading GooeyDev-1.0.8b5.tar.gz (561 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 561.3/561.3 kB 378.7 kB/s eta 0:00:00 Preparing metadata (setup.py) ... done Requirement already satisfied: wxPython>=4.1.0 in /opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages (from cryolo[c11]) (4.1.1) Collecting scikit-learn==0.23.2 (from cryolo[c11]) Downloading scikit_learn-0.23.2-cp38-cp38-manylinux1_x86_64.whl.metadata (7.3 kB) Collecting pyStarDB==0.3.1 (from cryolo[c11]) Downloading pyStarDB-0.3.1.tar.gz (11 kB) Preparing metadata (setup.py) ... done Collecting trackpy (from cryolo[c11]) Downloading trackpy-0.6.2.tar.gz (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.1/133.1 kB 129.5 kB/s eta 0:00:00 Preparing metadata (setup.py) ... done Collecting pandas==1.1.4 (from cryolo[c11]) Downloading pandas-1.1.4-cp38-cp38-manylinux1_x86_64.whl.metadata (4.7 kB) Collecting watchdog (from cryolo[c11]) Downloading watchdog-4.0.0-py3-none-manylinux2014_x86_64.whl.metadata (37 kB) Collecting tqdm (from cryolo[c11]) Downloading tqdm-4.66.4-py3-none-any.whl.metadata (57 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.6/57.6 kB 221.8 kB/s eta 0:00:00 Collecting protobuf==3.20.0 (from cryolo[c11]) Downloading protobuf-3.20.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (698 bytes) INFO: pip is looking at multiple versions of cryolo[c11] to determine which version is compatible with other requirements. This could take a while. Collecting cryolo[c11] Downloading cryolo-1.9.8.tar.gz (208 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 208.8/208.8 kB 178.7 kB/s eta 0:00:00 Preparing metadata (setup.py) ... done Downloading cryolo-1.9.7.tar.gz (208 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 208.7/208.7 kB 117.9 kB/s eta 0:00:00 Preparing metadata (setup.py) ... done Downloading cryolo-1.9.6.tar.gz (208 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 208.4/208.4 kB 97.5 kB/s eta 0:00:00 Preparing metadata (setup.py) ... done Downloading cryolo-1.9.5.tar.gz (208 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 208.4/208.4 kB 88.1 kB/s eta 0:00:00 Preparing metadata (setup.py) ... done Downloading cryolo-1.9.4.tar.gz (208 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 208.4/208.4 kB 68.6 kB/s eta 0:00:00 Preparing metadata (setup.py) ... done Downloading cryolo-1.9.3.tar.gz (208 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 208.5/208.5 kB 80.3 kB/s eta 0:00:00 Preparing metadata (setup.py) ... error error: subprocess-exited-with-error × python setup.py egg_info did not run successfully. │ exit code: 1 ╰─> [35 lines of output] ERROR: Could not find a version that satisfies the requirement Cython (from versions: none) ERROR: No matching distribution found for Cython /opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is depre cated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( Traceback (most recent call last): File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/setuptools/installer.py", line 82, in fetch_build_egg subprocess.check_call(cmd) File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/subprocess.py", line 364, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['/opt/ohpc/pub/apps/miniconda3/envs/cryolo/bin/python3.8', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--n o-deps', '-w', '/tmp/tmpvyfewhz3', '--quiet', 'Cython']' returned non-zero exit status 1. The above exception was the direct cause of the following exception: Traceback (most recent call last): File "<string>", line 2, in <module> File "<pip-setuptools-caller>", line 34, in <module> File "/tmp/pip-install-ozpu2aa9/cryolo_5b647a527b1a417bba05824fefe45892/setup.py", line 113, in <module> setup( File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/setuptools/__init__.py", line 86, in setup _install_setup_requires(attrs) File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/setuptools/__init__.py", line 80, in _install_setup_requires dist.fetch_build_eggs(dist.setup_requires) File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/setuptools/dist.py", line 874, in fetch_build_eggs resolved_dists = pkg_resources.working_set.resolve( File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/pkg_resources/__init__.py", line 789, in resolve dist = best[req.key] = env.best_match( File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1075, in best_match return self.obtain(req, installer) File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1087, in obtain return installer(requirement) File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/setuptools/dist.py", line 944, in fetch_build_egg return fetch_build_egg(self, req) File "/opt/ohpc/pub/apps/miniconda3/envs/cryolo/lib/python3.8/site-packages/setuptools/installer.py", line 84, in fetch_build_egg raise DistutilsError(str(e)) from e distutils.errors.DistutilsError: Command '['/opt/ohpc/pub/apps/miniconda3/envs/cryolo/bin/python3.8', '-m', 'pip', '--disable-pip-version-check', 'wheel', '- -no-deps', '-w', '/tmp/tmpvyfewhz3', '--quiet', 'Cython']' returned non-zero exit status 1. [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed × Encountered error while generating package metadata. ╰─> See above for output. note: This is an issue with the package mentioned above, not pip. hint: See above for details.
OS Version: Rocky Linux 8.9
Hi, when i use
pip --default-timeout=1000 install 'cryolo[c11]'install latest cryolo，it gives error like below：