I have ran the clustering based particle picking tutorial and encountered an issue when trying to find target clusters (step 5). The issue is that when I open my tomogram with Napari and load the UMAP and embedding file, the particle embeddings appear on the top left fourth of my tomogram only. Do you know how I can fix this so my tomogram is in alignment with the embeddings?
Hello,
I have ran the clustering based particle picking tutorial and encountered an issue when trying to find target clusters (step 5). The issue is that when I open my tomogram with Napari and load the UMAP and embedding file, the particle embeddings appear on the top left fourth of my tomogram only. Do you know how I can fix this so my tomogram is in alignment with the embeddings?
Thank you.