search

MPI-Dortmund / tomotwin-cryoet

cryo-ET particle picking by representation and metric learning
Mozilla Public License 2.0
32 stars 6 forks source link

Add median filter strategy #76

Closed GavinR1 closed 12 months ago

GavinR1 commented 1 year ago

Adding strategy for median filtering tomogram embeddings.

  1. Improves umap by removing background embeddings
  2. Speeds up calculations by reducing tomogram embeddings size by ~50%.
codecov[bot] commented 1 year ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (29e994b) 63.46% compared to head (a4c0de4) 63.52%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #76 +/- ## ========================================== + Coverage 63.46% 63.52% +0.06% ========================================== Files 60 60 Lines 3230 3230 ========================================== + Hits 2050 2052 +2 + Misses 1180 1178 -2 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

thorstenwagner commented 12 months ago

lgtm