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MPI-EVA-Archaeogenetics / comp_human_adna_book

This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis, with a particular emphasis on population genetics.
https://mpi-eva-archaeogenetics.github.io/comp_human_adna_book/
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Small reviews on chapter 7: Measuring population structure using Fst #16

Closed EirSkou closed 2 months ago

EirSkou commented 2 months ago

  1. [7.1.1] "Example: With N=100 (haploid individuals), we might consider a genetic locus with two alleles A and B, and in the parent generation, say, 50 individuals carried allele B, and 50 carried allele B. " --> Change one of the B to A

  2. [7.1.1] "As a statistical process, this amounts to a binomial process, where the N offspring individuals are drawn" --> add "with replacement".

  3. [7.2] When you define "REPO=/path/to/community-archive/2012_PattersonGenetics", maybe add a note or a link o how to download a poseidon package.

Other than that, the chapter is awesome!

stschiff commented 2 months ago

Great. I have added all of these points. Thanks a lot!