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MPI-IS Mesh Processing Library
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error Unknown endianness #81

Open ArjunZ786 opened 1 year ago

ArjunZ786 commented 1 year ago

I am getting the following error during "make all"

OS: Mac Host: x64-osx - Intel

I tried to compile using clang as well but I get the same error.

BOOST_INCLUDE_DIRS=/usr/local/Cellar/boost/1.81.0/include/ make all                           ─╯
----- [ mesh_package ] Installing with the interpreter /Users/ KNM/Docs/python_venv/bin/python (version 3.9.13)
Requirement already satisfied: setuptools in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from -r requirements.txt (line 1)) (66.1.1)
Requirement already satisfied: numpy in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (1.24.1)
Requirement already satisfied: matplotlib in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from -r requirements.txt (line 3)) (3.6.3)
Requirement already satisfied: scipy in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from -r requirements.txt (line 4)) (1.10.0)
Requirement already satisfied: pyopengl in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from -r requirements.txt (line 5)) (3.1.6)
Requirement already satisfied: pillow in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from -r requirements.txt (line 6)) (9.4.0)
Requirement already satisfied: pyzmq in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from -r requirements.txt (line 7)) (25.0.0)
Requirement already satisfied: pyyaml in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from -r requirements.txt (line 8)) (6.0)
Requirement already satisfied: opencv-python in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from -r requirements.txt (line 9)) (4.7.0.68)
Requirement already satisfied: cycler>=0.10 in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (0.11.0)
Requirement already satisfied: pyparsing>=2.2.1 in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (3.0.9)
Requirement already satisfied: fonttools>=4.22.0 in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (4.34.4)
Requirement already satisfied: kiwisolver>=1.0.1 in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (1.4.4)
Requirement already satisfied: contourpy>=1.0.1 in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (1.0.7)
Requirement already satisfied: packaging>=20.0 in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (21.3)
Requirement already satisfied: python-dateutil>=2.7 in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (2.8.2)
Requirement already satisfied: six>=1.5 in /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages (from python-dateutil>=2.7->matplotlib->-r requirements.txt (line 3)) (1.16.0)
Package               Version
--------------------- ----------------------
absl-py               1.2.0
addict                2.4.0
aiohttp               3.8.3
aiosignal             1.3.1
alphashape            1.3.1
appdirs               1.4.4
appnope               0.1.3
asttokens             2.0.7
async-timeout         4.0.2
attrs                 22.1.0
backcall              0.2.0
certifi               2022.12.7
cgal                  5.5.1.post202210191030
charset-normalizer    2.1.1
checkerboard          0.2.4
chumpy                0.70
click                 8.1.3
click-log             0.4.0
contourpy             1.0.7
cycler                0.11.0
Cython                0.29.21
debugpy               1.6.2
decorator             5.1.1
dlib                  19.24.0
entrypoints           0.4
executing             0.9.1
fonttools             4.34.4
frozenlist            1.3.3
grpcio                1.50.0
grpcio-tools          1.50.0
idna                  3.4
imageio               2.21.1
iniconfig             1.1.1
ipykernel             6.15.1
ipython               8.4.0
jedi                  0.18.1
joblib                1.1.0
jupyter-client        7.3.4
jupyter-core          4.11.1
kiwisolver            1.4.4
matplotlib            3.6.3
matplotlib-inline     0.1.3
mediapipe             0.8.11
mpmath                1.2.1
multidict             6.0.4
nest-asyncio          1.5.5
networkx              2.8.5
numpy                 1.24.1
open3d                0.15.1
opencv-contrib-python 4.5.5.64
opencv-python         4.7.0.68
packaging             21.3
pandas                1.4.3
parso                 0.8.3
pexpect               4.8.0
pickleshare           0.7.5
piexif                1.1.3
Pillow                9.4.0
pip                   22.3.1
pluggy                1.0.0
pooch                 1.6.0
prompt-toolkit        3.0.30
protobuf              3.20.1
psutil                5.9.1
psycopg2              2.9.3
ptyprocess            0.7.0
pure-eval             0.2.2
py                    1.11.0
pycolmap              0.2.0
Pygments              2.12.0
pymeshlab             2022.2.post2
PyOpenGL              3.1.6
pyparsing             3.0.9
pyquaternion          0.9.9
pytest                7.1.3
python-dateutil       2.8.2
pytz                  2022.1
pyvista               0.37.0
PyWavelets            1.3.0
PyYAML                6.0
pyzmq                 25.0.0
rawpy                 0.17.1
requests              2.28.1
Rtree                 1.0.1
scikit-image          0.19.3
scikit-learn          1.1.2
scipy                 1.10.0
scooby                0.7.0
setuptools            66.1.1
shapely               2.0.0
six                   1.16.0
stack-data            0.3.0
sympy                 1.10.1
threadpoolctl         3.1.0
tifffile              2022.8.8
tomli                 2.0.1
tornado               6.2
tqdm                  4.64.0
traitlets             5.3.0
trimesh               3.17.1
urllib3               1.26.13
vtk                   9.2.2
wcwidth               0.2.5
Werkzeug              1.0.1
wheel                 0.37.1
wslink                1.10.0
yarl                  1.8.2
Using pip 22.3.1 from /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/pip (python 3.9)
WARNING: Implying --no-binary=:all: due to the presence of --build-option / --global-option / --install-option. Consider using --config-settings for more flexibility.
DEPRECATION: --install-option is deprecated because it forces pip to use the 'setup.py install' command which is itself deprecated. pip 23.1 will enforce this behaviour change. A possible replacement is to use --config-settings. Discussion can be found at https://github.com/pypa/pip/issues/11358
DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
Processing /Users/ KNM/Docs/flame/mesh
  Running command python setup.py egg_info
  [VERSION] read version is 0.4
  /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/setuptools/dist.py:285: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420).
    warnings.warn(msg, SetuptoolsDeprecationWarning)
  running egg_info
  creating /private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-pip-egg-info-nrg423hw/psbody_mesh.egg-info
  writing /private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-pip-egg-info-nrg423hw/psbody_mesh.egg-info/PKG-INFO
  writing dependency_links to /private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-pip-egg-info-nrg423hw/psbody_mesh.egg-info/dependency_links.txt
  writing namespace_packages to /private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-pip-egg-info-nrg423hw/psbody_mesh.egg-info/namespace_packages.txt
  writing requirements to /private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-pip-egg-info-nrg423hw/psbody_mesh.egg-info/requires.txt
  writing top-level names to /private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-pip-egg-info-nrg423hw/psbody_mesh.egg-info/top_level.txt
  writing manifest file '/private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-pip-egg-info-nrg423hw/psbody_mesh.egg-info/SOURCES.txt'
  /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
    warnings.warn(
  reading manifest file '/private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-pip-egg-info-nrg423hw/psbody_mesh.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  adding license file 'LICENSE.txt'
  writing manifest file '/private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-pip-egg-info-nrg423hw/psbody_mesh.egg-info/SOURCES.txt'
  Preparing metadata (setup.py) ... done
Installing collected packages: psbody-mesh
  DEPRECATION: psbody-mesh is being installed using the legacy 'setup.py install' method, because the '--no-binary' option was enabled for it and this currently disables local wheel building for projects that don't have a 'pyproject.toml' file. pip 23.1 will enforce this behaviour change. A possible replacement is to enable the '--use-pep517' option. Discussion can be found at https://github.com/pypa/pip/issues/11451
  Running command Running setup.py install for psbody-mesh
  [VERSION] read version is 0.4
  /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/setuptools/dist.py:285: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420).
    warnings.warn(msg, SetuptoolsDeprecationWarning)
  running install
  /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
    warnings.warn(
  running build
  running build_py
  running build_ext
  [CGAL] deflating cgal from "mesh/thirdparty/CGAL-4.7.tar.gz" to "/Users/ KNM/Docs/flame/mesh/build/temp.macosx-10.9-universal2-cpython-39"
  building 'psbody.mesh.aabb_normals' extension
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch arm64 -arch x86_64 -g -DNDEBUG=1 -DCGAL_NDEBUG=1 -DMESH_CGAL_AVOID_COMPILED_VERSION=1 -DCGAL_HAS_NO_THREADS=1 -DCGAL_NO_AUTOLINK_CGAL=1 -Imesh/src -I/Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/numpy/core/include -I/Users/ KNM/Docs/flame/mesh/build/temp.macosx-10.9-universal2-cpython-39/CGAL-4.7/include -I/usr/local/Cellar/boost/1.81.0/include/ -I/Users/ KNM/Docs/python_venv/include -I/Library/Frameworks/Python.framework/Versions/3.9/include/python3.9 -c mesh/src/aabb_normals.cpp -o build/temp.macosx-10.9-universal2-cpython-39/mesh/src/aabb_normals.o -O3
  In file included from mesh/src/aabb_normals.cpp:4:
  In file included from /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5:
  In file included from /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
  In file included from /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940:
  /Users/ KNM/Docs/python_venv/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
  #warning "Using deprecated NumPy API, disable it with " \
   ^
  In file included from mesh/src/aabb_normals.cpp:10:
  In file included from mesh/src/AABB_n_tree.h:9:
  In file included from /Users/ KNM/Docs/flame/mesh/build/temp.macosx-10.9-universal2-cpython-39/CGAL-4.7/include/CGAL/AABB_tree.h:26:
  In file included from /Users/ KNM/Docs/flame/mesh/build/temp.macosx-10.9-universal2-cpython-39/CGAL-4.7/include/CGAL/internal/AABB_tree/AABB_traversal_traits.h:24:
  In file included from /Users/ KNM/Docs/flame/mesh/build/temp.macosx-10.9-universal2-cpython-39/CGAL-4.7/include/CGAL/internal/AABB_tree/AABB_node.h:24:
  In file included from /Users/ KNM/Docs/flame/mesh/build/temp.macosx-10.9-universal2-cpython-39/CGAL-4.7/include/CGAL/Profile_counter.h:53:
  /Users/ KNM/Docs/flame/mesh/build/temp.macosx-10.9-universal2-cpython-39/CGAL-4.7/include/CGAL/config.h:265:4: error: Unknown endianness
  #  error Unknown endianness
     ^
  In file included from mesh/src/aabb_normals.cpp:10:
  In file included from mesh/src/AABB_n_tree.h:10:
  In file included from /Users/ KNM/Docs/flame/mesh/build/temp.macosx-10.9-universal2-cpython-39/CGAL-4.7/include/CGAL/AABB_traits.h:31:
  /usr/local/Cellar/boost/1.81.0/include/boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages]
  BOOST_PRAGMA_MESSAGE(
  ^
  /usr/local/Cellar/boost/1.81.0/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
  # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
                                   ^
  <scratch space>:14:2: note: expanded from here
   message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " "<boost/bind/bind.hpp> + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.")
   ^
  2 warnings and 1 error generated.
  error: command '/usr/bin/gcc' failed with exit code 1
  error: subprocess-exited-with-error

  × Running setup.py install for psbody-mesh did not run successfully.
  │ exit code: 1
  ╰─> See above for output.

  note: This error originates from a subprocess, and is likely not a problem with pip.
  full command: /Users/ KNM/Docs/python_venv/bin/python3 -u -c '
  exec(compile('"'"''"'"''"'"'
  # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
  #
  # - It imports setuptools before invoking setup.py, to enable projects that directly
  #   import from `distutils.core` to work with newer packaging standards.
  # - It provides a clear error message when setuptools is not installed.
  # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
  #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
  #     manifest_maker: standard file '"'"'-c'"'"' not found".
  # - It generates a shim setup.py, for handling setup.cfg-only projects.
  import os, sys, tokenize

  try:
      import setuptools
  except ImportError as error:
      print(
          "ERROR: Can not execute `setup.py` since setuptools is not available in "
          "the build environment.",
          file=sys.stderr,
      )
      sys.exit(1)

  __file__ = %r
  sys.argv[0] = __file__

  if os.path.exists(__file__):
      filename = __file__
      with tokenize.open(__file__) as f:
          setup_py_code = f.read()
  else:
      filename = "<auto-generated setuptools caller>"
      setup_py_code = "from setuptools import setup; setup()"

  exec(compile(setup_py_code, filename, "exec"))
  '"'"''"'"''"'"' % ('"'"'/Users/ KNM/Docs/flame/mesh/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' install --record /private/var/folders/kl/68r6m05168d_ygmpq7szq7280000gn/T/pip-record-uyk_rljj/install-record.txt --single-version-externally-managed --compile --install-headers /Users/ KNM/Docs/python_venv/include/site/python3.9/psbody-mesh --boost-location=/usr/local/Cellar/boost/1.81.0/include/
  cwd: /Users/ KNM/Docs/flame/mesh/
  Running setup.py install for psbody-mesh ... error
error: legacy-install-failure

× Encountered error while trying to install package.
╰─> psbody-mesh

note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
make: *** [all] Error 1
xtliu97 commented 1 year ago

This may caused by include error on MacOS with Apple's chip. I shared my solution here https://github.com/MPI-IS/mesh/issues/61#issuecomment-1437200348 Hope this will help.