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MPIBGC-TEE / SoilR

Development version of the SoilR package
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Where is the library on CRAN? #2

Closed Daniel-Trung-Nguyen closed 1 year ago

Daniel-Trung-Nguyen commented 2 years ago

I could no longer find the library on CRAN and some of the document links are also dead. Cheers, Daniel

mamueller commented 2 years ago

https://cran.r-project.org/web/packages/SoilR/index.html

crlsierra commented 2 years ago

The CRAN server was down during the weekend, but it is running again. You can find the package in the link provided above.

Daniel-Trung-Nguyen commented 2 years ago

Thank you! Just out of curiosity, do you guys have a plan to create a similar python library?

crlsierra commented 2 years ago

We have three python packages that overlap in most of the functionality with SoilR, but are more general in scope. LAPM provides functions to analyze compartmental/pool models at equilibrium. CompartmentalSystems provides functions to analyze models out of equilibrium. BGC-MD is a data base of ecosystem carbon models that can help you decide what type of analysis you can perform. These three packages are not targeted to soil carbon models as in SoilR, but can be used to run and analyze any mass-balanced model.

Daniel-Trung-Nguyen commented 2 years ago

@crlsierra Thank you for the answer! I am particularly interested in the implementation of the Century model in soilR. I am not sure how that can be done in Python using those python packages?

crlsierra commented 1 year ago

For how to implement models in LAPM or CompartmentalSystems, please check the documentation of those packages.

mamueller commented 1 year ago

The century model is already in bgc-md2 as https://github.com/MPIBGC-TEE/bgc_md2/blob/master/src/bgc_md2/models/Parton1987SoilSciSocAmJ/source.py

What do you want to do with it. p.s. If you are at AGU by any chance we can work together on a small example.

Cheers Markus

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Closed #2 https://github.com/MPIBGC-TEE/SoilR-exp/issues/2 as completed.

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Daniel-Trung-Nguyen commented 1 year ago

Thanks @mamueller! I'll take a look at this. I have been using the compiled versions of Century and DayCent for a long time for landscape simulations of soil C stock change, so it will reduce the computational burden to have part of the model implemented in Python. I am currently developing the DayCent-AU model at the Queensland University of Technology. You can check out some tutorials here: https://www.youtube.com/@daycentmodel9086 Unfortunately, I am not at the AGU this year, but let me know your interests and perhaps we can collaborate in the future. Best, Trung