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MPIIComputationalEpigenetics / DeepBlue

DeepBlue Epigenomic Data Server
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Mouse gene models #158

Closed jmfernandez closed 7 years ago

jmfernandez commented 7 years ago

Querying DeepBlue I have realized it contains several mouse genomes, but no gene model linked to these ones.

Could you add them, please? I have been researching a bit. For mm9 (NCBIM37, GRCm37) the only available GENCODE release is the first one (M1). The other GENCODE releases are compatible with mm10 (GRCm38), so you can use either the latest one (M13) or the nearest one to the projects' release dates using mm10 as reference.

felipealbrecht commented 7 years ago

Work in progress - https://github.com/MPIIComputationalEpigenetics/DeepBlue-Populator/commit/c51cc7111e74759b2617ef639e36de61d1706320

felipealbrecht commented 7 years ago

Gencode vM1 and vM13 were included into DeepBlue.