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MPUSP
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snakemake-crispr-guides
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
MIT License
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2
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remove `defaults` channel from conda envs
#38
m-jahn
opened
1 day ago
0
fix: smaller issues
#37
m-jahn
closed
2 weeks ago
0
flagging restriction sites in config file throws error message and/or has no effect
#36
m-jahn
closed
2 weeks ago
0
fix: minor issues
#35
m-jahn
closed
1 month ago
0
minor issues with WD when sourcing script, and ggplot2
#34
m-jahn
closed
1 month ago
0
chore(main): release 1.3.0
#33
github-actions[bot]
opened
5 months ago
0
feat: changed license to MIT, closes #30
#32
m-jahn
closed
5 months ago
0
fix: updated conda environments
#31
DonatWulf
closed
6 months ago
1
change license to MIT
#30
m-jahn
closed
5 months ago
0
feat: various fixes for improved tiling function
#29
m-jahn
closed
6 months ago
0
improve output figures for intergenic regions when using tiling approach
#28
m-jahn
closed
6 months ago
0
chore(main): release 1.2.0
#27
github-actions[bot]
closed
6 months ago
1
feat: enable workflow to run with singularity
#26
m-jahn
closed
7 months ago
0
feature request: option to add additional space around CDS when designing intergenic guides
#25
m-jahn
closed
7 months ago
0
feat: various milestones for release v1.1.0
#24
m-jahn
closed
8 months ago
0
feat: various improvements of documentation
#23
m-jahn
closed
8 months ago
0
workflow is listed in snakemake wf catalog, but not as "standardized usage"
#22
m-jahn
closed
6 months ago
3
Additional types of CDS annotations
#21
Michael-Astbury
closed
8 months ago
2
add possibility to create guides by tiling only, or by tiling for intergenic regions (mixed)
#20
m-jahn
closed
8 months ago
1
When using assembly: "GCF_005577135.1", species name is not parsed correctly, which is causing failure in create_bsgenome.R and design_guides.R
#19
ute-hoffmann
closed
8 months ago
4
feat: added config README and updated workflow catalog options
#18
m-jahn
closed
9 months ago
0
feat: various improvements to handle input and output (mainly gff files)
#17
m-jahn
closed
11 months ago
0
add feature to export guide list as GFF file for visualization
#16
m-jahn
closed
11 months ago
0
improve flexibility of handling `gff` input files
#15
m-jahn
closed
11 months ago
0
fix: bump versions and remove installation of 1 package from gh
#14
m-jahn
closed
1 year ago
0
chore(main): release 1.1.0
#13
github-actions[bot]
closed
8 months ago
1
Feature requests: add function to design random control guide RNAs
#12
m-jahn
closed
1 year ago
1
Add functionality to deal with guides targeting multiple loci (e.g. duplicated) genes
#11
m-jahn
closed
1 year ago
0
chore(main): release 1.0.0
#10
github-actions[bot]
closed
1 year ago
1
avoid overlap between TSS window (5' UTR) and 3' terminus of upstream gene
#9
m-jahn
closed
1 year ago
0
add overview figures for pipeline and guide RNA localization on strands
#8
m-jahn
closed
1 year ago
0
Test behavior with alternative options
#7
m-jahn
closed
1 year ago
1
Testing fails on GH actions with snakemake test workflow
#6
m-jahn
closed
1 year ago
0
Feature request: add score based on G content of seed region
#5
m-jahn
closed
1 year ago
0
Add module to generate BSgenome --> enables bowtie as default off-target search
#4
m-jahn
closed
1 year ago
1
Feature request: add score based on distance to TSS
#3
m-jahn
closed
1 year ago
0
Feature request: add CRISPRoff score
#2
m-jahn
closed
1 year ago
1
chore(main): release 1.0.0
#1
github-actions[bot]
closed
1 year ago
0