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MRCIEU / Lifecourse-GWAS

MIT License
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Hackathon #12

Closed explodecomputer closed 7 months ago

explodecomputer commented 10 months ago

Ok so I think ahead of the hackathon we need the following.

  1. This github repo cloned in your working directory on your laptop or server where you have access to the relevant data https://github.com/mrcieu/lifecourse-gwas. E.g. I would probably do it on epifranklin or bc4
  2. Clone the example data repository also https://github.com/mrcieu/lifecourse-example-data
  3. Make sure the RDSF project directory is accessible - https://ieuportal.epi.bris.ac.uk/project_detail/6223db9a-d47e-4c6e-a1cc-fc88897efbfa/
  4. Install the relevant R packages using the renv command https://github.com/mrcieu/lifecourse-gwas#installing-r-packages
  5. Copy config-template.json to config.json and update the paths to point to the data directories
  6. See if you can run the example code – https://github.com/mrcieu/lifecourse-gwas#run – it might error for whatever reason but make sure it doesn’t error out due to not being able to see the data or the required R packages