PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
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Error "ERROR 1990 CAT-SIN 100349" and Error in polr(phenoFactor ~ ., data = confounders, Hess = TRUE): attempt to find suitable starting values failed #38
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FleetingA closed 1 year ago
After running the script and inspecting the results, I notice that a very large proportion of my tested phenotypes produce the below error:
1940_2|| CAT-SINGLE || Inc(>=10): No(30795) || Inc(>=10): Yes(10353) || Inc(>=10): Do not know(1850) || Inc(>=10): Prefer not to answer(68) || [1] "ERROR 1940 CAT-SIN 100349"
1950_2|| CAT-SINGLE || Inc(>=10): No(22647) || Inc(>=10): Yes(19027) || Inc(>=10): Do not know(1346) || Inc(>=10): Prefer not to answer(46) || [1] "ERROR 1950 CAT-SIN 100349"
1990_2|| CAT-SINGLE || Inc(>=10): No(37008) || Inc(>=10): Yes(5022) || Inc(>=10): Do not know(1000) || Inc(>=10): Prefer not to answer(36) || [1] "ERROR 1990 CAT-SIN 100349"
2020_2|| CAT-SINGLE || Inc(>=10): No(36757) || Inc(>=10): Yes(5694) || Inc(>=10): Do not know(533) || Inc(>=10): Prefer not to answer(82) || [1] "ERROR 2020 CAT-SIN 100349"
or
ERROR: 2050 Error in polr(phenoFactor ~ ., data = confounders, Hess = TRUE): attempt to find suitable starting values failed
Has anyone figured out what might be causing said errors?
Thanks in advance for any advice!