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MRCIEU / TwoSampleMR

R package for performing 2-sample MR using MR-Base database
https://mrcieu.github.io/TwoSampleMR
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available_outcomes() error #67

Open jennysjaarda opened 5 years ago

jennysjaarda commented 5 years ago

Hi,

When I run available_outcomes(), the mrbase.oauth is created but I get the following error:

Error: GDK_BACKEND does not match available displays.

Thanks in advance for any help solving this issue.

mightyphil2000 commented 5 years ago

Hi Jenny

What happens if you delete mrbase.oauth and try again?

From: jennysjaarda notifications@github.com Sent: 28 March 2019 11:01:57 To: MRCIEU/TwoSampleMR Cc: Subscribed Subject: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

Hi,

When I run available_outcomes(), the mrbase.oauth is created but I get the following error:

Error: GDK_BACKEND does not match available displays.

Thanks in advance for any help solving this issue.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/MRCIEU/TwoSampleMR/issues/67, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AKQwPnrBIh3ljo2V1LPm9cTrMRfz2xHJks5vbKElgaJpZM4cP4Zw.

jennysjaarda commented 5 years ago

Hello,

Thanks for your response. When I delete the file I receive the same error, but if I run again after the error, I actually receive a different error. See attached.

Jenny

On Mar 28, 2019, at 1:43 PM, mightyphil2000 notifications@github.com wrote:

Hi Jenny

What happens if you delete mrbase.oauth and try again?

From: jennysjaarda notifications@github.com Sent: 28 March 2019 11:01:57 To: MRCIEU/TwoSampleMR Cc: Subscribed Subject: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

Hi,

When I run available_outcomes(), the mrbase.oauth is created but I get the following error:

Error: GDK_BACKEND does not match available displays.

Thanks in advance for any help solving this issue.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/MRCIEU/TwoSampleMR/issues/67, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AKQwPnrBIh3ljo2V1LPm9cTrMRfz2xHJks5vbKElgaJpZM4cP4Zw. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/MRCIEU/TwoSampleMR/issues/67#issuecomment-477579013, or mute the thread https://github.com/notifications/unsubscribe-auth/AiaZVr-TDVV1lnM_A_Cg0Qm2hNZEZc26ks5vbLj_gaJpZM4cP4Zw.

mightyphil2000 commented 5 years ago

Hi Jenny did you forget to attach?

Get Outlook for iOShttps://aka.ms/o0ukef

From: jennysjaarda notifications@github.com Sent: Thursday, March 28, 2019 2:06 pm To: MRCIEU/TwoSampleMR Cc: Philip Haycock; Comment Subject: Re: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

Hello,

Thanks for your response. When I delete the file I receive the same error, but if I run again after the error, I actually receive a different error. See attached.

Jenny

On Mar 28, 2019, at 1:43 PM, mightyphil2000 notifications@github.com wrote:

Hi Jenny

What happens if you delete mrbase.oauth and try again?

From: jennysjaarda notifications@github.com Sent: 28 March 2019 11:01:57 To: MRCIEU/TwoSampleMR Cc: Subscribed Subject: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

Hi,

When I run available_outcomes(), the mrbase.oauth is created but I get the following error:

Error: GDK_BACKEND does not match available displays.

Thanks in advance for any help solving this issue.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/MRCIEU/TwoSampleMR/issues/67, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AKQwPnrBIh3ljo2V1LPm9cTrMRfz2xHJks5vbKElgaJpZM4cP4Zw. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/MRCIEU/TwoSampleMR/issues/67#issuecomment-477579013, or mute the thread https://github.com/notifications/unsubscribe-auth/AiaZVr-TDVV1lnM_A_Cg0Qm2hNZEZc26ks5vbLj_gaJpZM4cP4Zw.

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jennysjaarda commented 5 years ago

Sorry here it is.

PastedGraphic-1
mightyphil2000 commented 5 years ago

Are you running available_outcomes on a remote server?

From: jennysjaarda notifications@github.com Sent: 28 March 2019 14:19:06 To: MRCIEU/TwoSampleMR Cc: Philip Haycock; Comment Subject: Re: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

Sorry here it is. [PastedGraphic-1]https://user-images.githubusercontent.com/36084054/55164925-ca11e900-516c-11e9-8241-d3ba4af262ef.png

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jennysjaarda commented 5 years ago

Yes exactly

On Thu, Mar 28, 2019 at 3:30 PM mightyphil2000 notifications@github.com wrote:

Are you running available_outcomes on a remote server?

From: jennysjaarda notifications@github.com Sent: 28 March 2019 14:19:06 To: MRCIEU/TwoSampleMR Cc: Philip Haycock; Comment Subject: Re: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

Sorry here it is. [PastedGraphic-1]< https://user-images.githubusercontent.com/36084054/55164925-ca11e900-516c-11e9-8241-d3ba4af262ef.png

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.

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mightyphil2000 commented 5 years ago

When you type available_outcomes() does your browser open up asking you to authenticate your ID?

From: jennysjaarda notifications@github.com Sent: 28 March 2019 14:31:13 To: MRCIEU/TwoSampleMR Cc: Philip Haycock; Comment Subject: Re: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

Yes exactly

On Thu, Mar 28, 2019 at 3:30 PM mightyphil2000 notifications@github.com wrote:

Are you running available_outcomes on a remote server?

From: jennysjaarda notifications@github.com Sent: 28 March 2019 14:19:06 To: MRCIEU/TwoSampleMR Cc: Philip Haycock; Comment Subject: Re: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

Sorry here it is. [PastedGraphic-1]< https://user-images.githubusercontent.com/36084054/55164925-ca11e900-516c-11e9-8241-d3ba4af262ef.png

— You are receiving this because you commented. Reply to this email directly, view it on GitHub< https://github.com/MRCIEU/TwoSampleMR/issues/67#issuecomment-477614683>, or mute the thread< https://github.com/notifications/unsubscribe-auth/AKQwPmoAZhrXQrnY4b6cscZpPDcOQb03ks5vbM9agaJpZM4cP4Zw

.

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jennysjaarda commented 5 years ago

No, it is not able to open my browser.

mightyphil2000 commented 5 years ago

How did you create the mrbase.oauth file before?

It sounds like this is some kind of "GUI issue". A quick work around might be to create the mrbase.oauth file on your local machine and to transfer it to your working directory on the server. does that help?

From: jennysjaarda notifications@github.com Sent: 28 March 2019 14:33:36 To: MRCIEU/TwoSampleMR Cc: Philip Haycock; Comment Subject: Re: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

No, it is not able to open my browser.

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jennysjaarda commented 5 years ago

Hello, I could not solve the issue, but I just used the following command and as a workaround: ao <- available_outcomes(access_token=NULL)

On Thu, Mar 28, 2019 at 3:41 PM mightyphil2000 notifications@github.com wrote:

How did you create the mrbase.oauth file before?

It sounds like this is some kind of "GUI issue". A quick work around might be to create the mrbase.oauth file on your local machine and to transfer it to your working directory on the server. does that help?

From: jennysjaarda notifications@github.com Sent: 28 March 2019 14:33:36 To: MRCIEU/TwoSampleMR Cc: Philip Haycock; Comment Subject: Re: [MRCIEU/TwoSampleMR] available_outcomes() error (#67)

No, it is not able to open my browser.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub< https://github.com/MRCIEU/TwoSampleMR/issues/67#issuecomment-477620881>, or mute the thread< https://github.com/notifications/unsubscribe-auth/AKQwPj0A6ev3l98V5WI3TdgGk_fe_gYAks5vbNLAgaJpZM4cP4Zw

.

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