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MRCIEU / godmc

GoDMC analysis pipeline
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16. Analysis of phase 1 candidate associations #18

Closed yocra3 closed 7 years ago

yocra3 commented 7 years ago

Hi!

When I am running the script ./16b-control.sh I have the following error:

./16b-control.sh: line 54: /panfs/panasas01/shared-godmc/godmc_phase2_analysis/scratch/frq/INMA.frq.tmp: No such file or directory

Here you have the full output:

`GoDMC version 0.1.1 Commit: 9a92ac0cc4c793e01415b431e647e7adc6ceadfe Commit date: 2017-05-30 15:01:54 +0100 Current time: Fri Jun 2 09:02:06 CEST 2017

Please ensure your scripts are up to date. If in doubt, run 'git pull'

Running positive control Testing cis-region of

Running positive control - This involves testing the cis-region of cg07959070, extracting the top hit and performing GWAS with the cis-hit fitted as a covariate

There should be a strong signal at the cis region, and no evidence for population stratification in the GWAS

Probe is available in the data ./16b-control.sh: line 54: /panfs/panasas01/shared-godmc/godmc_phase2_analysis/scratch/frq/INMA.frq.tmp: No such file or directory`

epzjlm commented 7 years ago

Hi, Sorry about this. This issue has been fixed. Please run git pull and try again.