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MRCIEU / godmc

GoDMC analysis pipeline
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Missingness in phenotype data #9

Closed luijkr closed 8 years ago

luijkr commented 8 years ago

Hi there! In the LLS data a little over 10% (10.5%) of height and BMI are missing, giving a warning telling me to address this issue. Previously I just substituted the mean height/BMI, so the scripts would run - not the ideal scenario. However, I cannot possibly deal with this issue, the data just isn't there and I don't think they will be in the (near) future. Therefore, uploading the new results also isn't possible. Thoughts?

explodecomputer commented 8 years ago

hey rené good point, i think this should just be a warning and not an error. will change it now

explodecomputer commented 8 years ago

ok that should work now. i'm just gonna try to restructure this a little so that it is broken down into sections, e.g. check genetic data, methylation data, cnv data, covariate data, phenotype data, installed packages will be separate