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MRCIEU / godmc_phase2_analysis

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harmonisation issues #1

Open epzjlm opened 7 years ago

epzjlm commented 7 years ago

We need to save log files for METAL

Processing file 'Phase2_SCZ_16_900.gz'

WARNING: Bad alleles for marker 'chr10:3315237:INDEL_cg25898111', expecting 'd/i' found 'ac/gc'

WARNING: Bad alleles for marker 'chr11:84594985:INDEL_cg25872744', expecting 'd/i' found 'cg/tg'

WARNING: Bad alleles for marker 'chr17:78870117:INDEL_cg25902229', expecting 'd/i' found 'cagc/tagc'

WARNING: Bad alleles for marker 'chr7:55002841:INDEL_cg25866552', expecting 'd/i' found 'gc/tc'

cwnag-c commented 1 year ago

HOW?