OSError: error when opening file `human_g1k_v37.fasta.gz`

MRCIEU / gwas2vcf

Convert GWAS summary statistics to VCF

MIT License

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OSError: error when opening file `human_g1k_v37.fasta.gz` #66

Closed jielab closed 3 years ago

jielab commented 3 years ago

Hi, guys:

I followed the instruction to download the human_g1k_v37.fasta.gz file 2 times. But as shown in the following screenshot, GWAS2VCF keeps complaining that this file could not be read.

Do you guys have a md5 file for me to check I got the correct file?

Thank you very much & best regards, Jie

mcgml commented 3 years ago

Hi @jielab

The FASTA file and index should be uncompressed gzip -d <file>. Sorry for the confusion, I will update the docs.

Thanks Matt