MRCIEU / gwasglue

Linking GWAS data to analytical tools in R
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docker #20

Open mcgml opened 4 years ago

verdurin commented 4 years ago

@mcgml Thanks for submitting this, which should help make cluster-wide installation less painful.

In testing it, I've found that I come up against GitHub API rate limits, so that the build fails:

Error: Failed to install 'gwasglue' from local:
  Failed to install 'ieugwasr' from GitHub:
  HTTP error 403.
  API rate limit exceeded for <my IP>. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)

  Rate limit remaining: 0/60
  Rate limit reset at: 2020-10-13 07:50:58 UTC

  To increase your GitHub API rate limit
  - Use `usethis::browse_github_pat()` to create a Personal Access Token.
  - Use `usethis::edit_r_environ()` and add the token as `GITHUB_PAT`.
Execution halted
error building at STEP "RUN R -e "devtools::install_local('.')"": error while running runtime: exit status 1
ERRO exit status 1

I've tried adding one of my existing tokens and I still see the error.

Don't suppose you saw this in your own testing?

It could be I need different settings on the token.