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opengwas-reports
Report module for IEU GWAS pipeline
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#10
Closed
YiLiu6240
closed
5 years ago
YiLiu6240
commented
5 years ago
Todo list
[X] Unify metrics naming:
[X]
is_*
returns a boolean
[X]
n_*
for metrics on counts
[X] A a "flag" section for trait-level qc
[X] Add trait name to table
[X] Meta: defn goes to own tab
~Add meta density~
[X] Check meta histogram
[X] scatterplot: Plot metrics against
n
[X] Calculate se_n metrics on a clumped sub-sample
[ ] Add flag on small sample
[ ] Settle on defn and flags for the current stage (gwas paper)
[ ] Add a simple server to show html
Planned
[ ] Fetch and query gwas catalog
[ ] Query google sheets
[ ] Add phesant info
[ ] A toggle to produce external facing report
Todo list
is_*
returns a booleann_*
for metrics on countsn
Planned