MRCIEU / opengwas-reports

Report module for IEU GWAS pipeline

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Roadmap #10

Closed YiLiu6240 closed 4 years ago

YiLiu6240 commented 5 years ago

Todo list

[X] Unify metrics naming:
- [X] is_* returns a boolean
- [X] n_* for metrics on counts
[X] A a "flag" section for trait-level qc
[X] Add trait name to table
[X] Meta: defn goes to own tab
~Add meta density~
[X] Check meta histogram
[X] scatterplot: Plot metrics against n
[X] Calculate se_n metrics on a clumped sub-sample
[ ] Add flag on small sample
[ ] Settle on defn and flags for the current stage (gwas paper)
[ ] Add a simple server to show html

Planned

[ ] Fetch and query gwas catalog
[ ] Query google sheets
[ ] Add phesant info
[ ] A toggle to produce external facing report