error creating report in WDL workflow

MRCIEU / opengwas-reports

Report module for IEU GWAS pipeline

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error creating report in WDL workflow #12

Closed mcgml closed 5 years ago

mcgml commented 5 years ago

Lines total/split/realigned/skipped: 9/0/0/0 Error in qcldsc(ldsc_file) : object 'NA_real' not found Calls: do.call ... -> splice_if -> probe -> map_lgl -> qcldsc Execution halted

mcgml commented 5 years ago

@YiLiu6240 any suggestions? The script runs OK outside of WDL so may be down to inaccessible inputs?

YiLiu6240 commented 5 years ago

That has been fixed in other branches but never landed on master. Feel free to work on any spinoff from master and I can merge them later (in a few month's time).

mcgml commented 5 years ago

amazing thanks