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MRCIEU / opengwas-reports

Report module for IEU GWAS pipeline
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error message #24

Open mcgml opened 4 years ago

mcgml commented 4 years ago 
Lines   total/split/realigned/skipped:  1337399/0/0/0
Parsed with column specification:
cols(
  X1 = col_character()
)

processing file: template.Rmd
Quitting from lines 126-131 (template.Rmd) 
Error in abs(qc_metrics$af_correlation) : 
  non-numeric argument to mathematical function
Calls: do.call ... freduce -> <Anonymous> -> process_flags -> flags__af_corr
In addition: There were 14 warnings (use warnings() to see them)
Execution halted
mcgml commented 4 years ago

this might relate to using the wrong reference genome build