Same as above plus negative SE in that GWAS:
ebi-a-GCST006980
OpenGWAS website states that these FinnGen GWAS coordinates are GRCh37, however, the coordinates are actually for GRCh38 (likely applies to other FinnGen GWAS):
finn-a-BIGUANIDES
finn-a-ANY_CANC
finn-a-CD2_BENIGN_LEIOMYOMA_UTERI
finn-a-E4_DM2
finn-a-E4_HYTHYNAS
finn-a-H7_CATARACTSENILE
finn-a-H7_IRIDOCYCLITIS
finn-a-I9_HYPTENS
finn-a-I9_VARICVE
finn-a-II_NEOPLASM
finn-a-K11_CHOLELITH
finn-a-K11_HERNIA
finn-a-SPONDYLOARTHRITIS
These BBJ GWAS I had a look at don't have RSID as identifiers but positional identifiers (in the form of 1_904165_G_A) instead. I only focused on these but I noticed that there is no consistency - other BBJ GWAS do have RSIDs as identifiers, as expected.
bbj-a-107
bbj-a-119
bbj-a-105
Wrong data (beta/SE) - massively inflated values (leads to all my MR analyses turning significant!) for these breast cancer and asthma GWAS:
ebi-a-GCST007799 ebi-a-GCST007800 ebi-a-GCST007236
Same as above plus negative SE in that GWAS: ebi-a-GCST006980
OpenGWAS website states that these FinnGen GWAS coordinates are GRCh37, however, the coordinates are actually for GRCh38 (likely applies to other FinnGen GWAS): finn-a-BIGUANIDES finn-a-ANY_CANC finn-a-CD2_BENIGN_LEIOMYOMA_UTERI finn-a-E4_DM2 finn-a-E4_HYTHYNAS finn-a-H7_CATARACTSENILE finn-a-H7_IRIDOCYCLITIS finn-a-I9_HYPTENS finn-a-I9_VARICVE finn-a-II_NEOPLASM finn-a-K11_CHOLELITH finn-a-K11_HERNIA finn-a-SPONDYLOARTHRITIS
These BBJ GWAS I had a look at don't have RSID as identifiers but positional identifiers (in the form of 1_904165_G_A) instead. I only focused on these but I noticed that there is no consistency - other BBJ GWAS do have RSIDs as identifiers, as expected. bbj-a-107 bbj-a-119 bbj-a-105