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MRIresearch / NeuroPipelines

Umbrella repository for managing and deploying neuroimaging pipelines
MIT License
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ANTS build failing in nklab-neurotools-v0.4 #12

Open chidiugonna opened 3 years ago

chidiugonna commented 3 years ago

Recent development with Kitware. Waiting for this bug fix (https://github.com/ANTsX/ANTs/issues/1236) to be completed by ANTS development team and then hopefully this will clear this issue.

chidiugonna commented 3 years ago 
Scanning dependencies of target ANTSFetchData
[ 87%] Generating /opt/ANTScode/bin/ANTS-build/ExternalData/TestData/Data/r16slice.nii.gz
-- Fetching "file:////opt/ANTScode/ANTs/.ExternalData/MD5/37aaa33029410941bf4affff0479fa18"
-- Fetching "http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&checksum=37aaa33029410941bf4affff0479fa18"
-- Fetching "http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=37aaa33029410941bf4affff0479fa18&algorithm=MD5"
-- [download 100% complete]
-- Fetching "http://www.itk.org/files/ExternalData/MD5/37aaa33029410941bf4affff0479fa18"
-- [download 100% complete]
CMake Error at /opt/ANTScode/ANTs/CMake/ExternalData.cmake:743 (message):
  Object MD5=37aaa33029410941bf4affff0479fa18 not found at:

    file:////opt/ANTScode/ANTs/.ExternalData/MD5/37aaa33029410941bf4affff0479fa18 ("Couldn't read a file:// file")
    http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&checksum=37aaa33029410941bf4affff0479fa18 ("HTTP response code said error")
    http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=37aaa33029410941bf4affff0479fa18&algorithm=MD5 ("Unsupported protocol")
    http://www.itk.org/files/ExternalData/MD5/37aaa33029410941bf4affff0479fa18 ("Unsupported protocol")
Call Stack (most recent call first):
  /opt/ANTScode/ANTs/CMake/ExternalData.cmake:765 (_ExternalData_download_object)

Examples/TestSuite/CMakeFiles/ANTSFetchData.dir/build.make:123: recipe for target 'ExternalData/TestData/Data/r16slice.nii.gz.md5-stamp' failed
make[5]: *** [ExternalData/TestData/Data/r16slice.nii.gz.md5-stamp] Error 1
CMakeFiles/Makefile2:8710: recipe for target 'Examples/TestSuite/CMakeFiles/ANTSFetchData.dir/all' failed
make[4]: *** [Examples/TestSuite/CMakeFiles/ANTSFetchData.dir/all] Error 2
Makefile:162: recipe for target 'all' failed
make[3]: *** [all] Error 2
CMakeFiles/ANTS.dir/build.make:113: recipe for target 'ANTS-prefix/src/ANTS-stamp/ANTS-build' failed
make[2]: *** [ANTS-prefix/src/ANTS-stamp/ANTS-build] Error 2
CMakeFiles/Makefile2:653: recipe for target 'CMakeFiles/ANTS.dir/all' failed
make[1]: *** [CMakeFiles/ANTS.dir/all] Error 2
Makefile:116: recipe for target 'all' failed
make: *** [all] Error 2
FATAL:   failed to execute %post proc: exit status 2
FATAL:   While performing build: while running engine: while running /opt/singularity353/libexec/singularity/bin/starter: exit status 255