MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
Currently there are separate command-line options for setting the multi-contrast weights for initial alignment, rigid, affine, and non-linear. However I suspect that in most use cases, users will simply want to use the same contrast weights for all stages, which should be achievable using a single command-line option.
Currently there are separate command-line options for setting the multi-contrast weights for initial alignment, rigid, affine, and non-linear. However I suspect that in most use cases, users will simply want to use the same contrast weights for all stages, which should be achievable using a single command-line option.