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MSGFPlus / msgfplus

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
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Data independent acquitsition #135

Closed kmoad closed 2 years ago

kmoad commented 2 years ago

Is it possible to use MS-GF+ to analyze DIA files?

alchemistmatt commented 2 years ago

No, DIA analysis requires a different approach. Use MSFragger (aka FragPipe): https://msfragger.nesvilab.org/

kmoad commented 2 years ago

Thanks!