Read many input mgf files at one time

MSGFPlus / msgfplus

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

Other

76 stars 36 forks source link

Read many input mgf files at one time #73

Closed dengchuanbio closed 5 years ago

dengchuanbio commented 5 years ago

Hi, i am a newbie to use the great msgfplus, but I ran into a little trouble. since i have a lot of mgf files, to search it, i need use java -jar xxx many times in a bash script, so does there have any way/settings to put/configure those input files into some where so i just need only one statement run it all at one time?

FarmGeek4Life commented 5 years ago

If you provide the path to a folder containing the files you want to search (they cannot be in subfolders), MS-GF+ will search all of the files in that folder with the same settings (but not in parallel).

dengchuanbio commented 5 years ago

thx, besides it would be nice to be able to run it in parallel