Order of entries in FASTA input file affects EValues

MSGFPlus / msgfplus

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

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Order of entries in FASTA input file affects EValues #74

Open mrForce opened 5 years ago

mrForce commented 5 years ago

Hey, this is very odd, but it seems that the order of the entries in the FASTA file given to MS-GF+ seems to have a small effect on the EValue in the output. This seems like a bug.