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MSKCC-Computational-Pathology / MIL-nature-medicine-2019

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Error while running MIL_train.py #20

Open naveenagorre opened 2 years ago

naveenagorre commented 2 years ago

Hello, I'm working on running the MIL_train script and it's throwing me the below mentioned error:

Any suggestions what's going on.

OS - Linux Openslide-python version 1.1.2

qiyueliuhuo23 commented 2 years ago

Hi,naveenagorre. I run the code recently and I got the same errors. So could you tell me how you deal with the error? Thanks a lot.

naveenagorre commented 2 years ago

Hi huo,

Thank you for reaching out. Few of my input variables obtained from dictionary are not int/float which is what the code expects. I have tried converting them into int/float and now I'm able to fix it. Also there is another repo who have also implemented code for MIL/RNN. https://github.com/TankZhouFirst/clinical-grade-computational-pathology-using-weakly-supervised-deep-learning-on-whole-slide-images

Regards [image002] Naveena Gorre Machine Learning Engineer Moffitt Cancer Center 12902 Magnolia Drive, Tampa, FL 33612 | email: @.***>

From: qiyueliuhuo23 @.> Sent: Friday, July 1, 2022 5:49 AM To: MSKCC-Computational-Pathology/MIL-nature-medicine-2019 @.> Cc: Gorre, Naveena @.>; Author @.> Subject: EXT:Re: [MSKCC-Computational-Pathology/MIL-nature-medicine-2019] Error while running MIL_train.py (Issue #20)

Hi,naveenagorre. I run the code recently and I got the same errors. So could you tell me how you deal with the error? Thanks a lot.

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qiyueliuhuo23 commented 2 years ago

Your answer was very useful to me, thank you very much for your help. Have a nice day!