Review package checks and iClusterPlus errors in github actions

MSKCC-Epi-Bio / gnomeR

Package to wrangle and visualize genomic data in R

https://mskcc-epi-bio.github.io/gnomeR/

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Review package checks and iClusterPlus errors in github actions #198

Closed karissawhiting closed 2 years ago

michaelcurry1123 commented 2 years ago

I added code to download Bioconductor packages and added it to the CMD-check action I also updated all versions of the checkouts to v2 from v1, only the Bioconductor code is set to v1: link to Bioconductor code: https://github.com/grimbough/bioc-actions/tree/v1/setup-bioc we will need to monitor the version of Bioconductor it is set at 3.15 but will change overtime

michaelcurry1123 commented 2 years ago

all checks are on version 2 instead of version 1 now and all pass