MSKCC-Epi-Bio / gnomeR

Package to wrangle and visualize genomic data in R
https://mskcc-epi-bio.github.io/gnomeR/
Other
26 stars 16 forks source link

"LOSS" not accepted as an alteration type for pivot_cna_wider #309

Open hfuchs5 opened 1 year ago

hfuchs5 commented 1 year ago

image

repex

crc_pub <- pull_data_synapse(cohort = "CRC", version = "v2.0-public") cna <- crc_pub$CRC_v2.0$cna

cna %>% pivot_cna_longer()%>% pivot_cna_wider()

karissawhiting commented 1 year ago

Please update on this after we figure out what LOSS means: https://github.com/MSKCC-Epi-Bio/gnomeR/wiki/CNA-Coding-Documentation