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MSKCC-Epi-Bio / gnomeR

Package to wrangle and visualize genomic data in R
https://mskcc-epi-bio.github.io/gnomeR/
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Sample_ID not recognized as valid column name #313

Closed karissawhiting closed 11 months ago

karissawhiting commented 1 year ago

`` binmat <- create_gene_binary(mutation = mut, cna = cna, fusion = sv) Error in.check_required_cols()at gnomeR/R/sanitize-data.R:115:2: ! The following required columns are missing in your fusion data: sample_id Runrlang::last_trace()` to see where the error occurred.

sv$Sample_ID [1] "P-0027598-T02-IM6"

karissawhiting commented 1 year ago

This is solved but need to check GENIE vignette knits before merging.