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MStarmans91 / WORC

Workflow for Optimal Radiomics Classification
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[BUG] #82

Closed jonasboh closed 3 months ago

jonasboh commented 1 year ago

Describe the bug After pip install WORC all libs like scikit-learn and imbalanced-learn are downgraded to versions which have conflicts with other libraries. I get the following error when importing WORC:

[WARNING] init:0082 >> Not running in a production installation (branch "unknown" from installed package) AttributeError: module 'numpy' has no attribute 'float'. np.float was a deprecated alias for the builtin float. To avoid this error in existing code, use float by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use np.float64 here. The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations

Downgrading numpy to version 1.19 gives additional problems with matplotlib. Seems like dependencies here are not up to date.

WORC configuration Not any changes applied.

To Reproduce pip install worc==3.6.0 python import WORC

Desktop:

MStarmans91 commented 1 year ago

Note that due to some dependencies, e.g. pyradiomics, WORC currently requires Python 3.6 or 3.7. I see you are using Python 3.9.15, that might cause some issues. when using Python 3.7, I don't run into any issues, since the versions of some packages including numpy that still support Python 3.7 are older. For numpy, I have tried up till 1.19.5. I hope in the near future WORC can support more recent Python versions, as 3.7 is quite old.

Please let me know whether the issue persists when downgrading to Python 3.7.

MStarmans91 commented 9 months ago

Closed due to inactivity, feel free to reopen if the issue persists