[BUG] - Githubissues

details

AttributeError Traceback (most recent call last) File E:\Tools\WORC-newpython\WORC\facade\simpleworc.py:66, in _error_bulldozer..dec(*args, *kwargs) 65 try: ---> 66 func(args, **kwargs) 67 except Exception as e:

File E:\Tools\WORC-newpython\WORC\facade\basicworc.py:191, in BasicWORC.execute(self) 190 # Build the fastr network --> 191 self._worc.build(buildtype=self._buildtype) 192 if self._add_evaluation:

File E:\Tools\WORC-newpython\WORC\WORC.py:562, in WORC.build(self, buildtype) 561 if buildtype == 'training': --> 562 self.build_training() 563 elif buildtype == 'inference':

File E:\Tools\WORC-newpython\WORC\WORC.py:601, in WORC.build_training(self) 600 # Create config source --> 601 self.source_class_config = self.network.create_source('ParameterFile', id='config_classification_source', node_group='conf', step_id='general_sources') 603 # Classification tool and label source

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\api__init__.py:576, in Network.create_source(self, datatype, id, step_id, resources, node_group) 575 resources = resources or ResourceLimit() --> 576 return Node(self.parent.createsource( 577 datatype=datatype, 578 id=id, 579 stepid=step_id, 580 resources=resources.copy(), 581 nodegroup=node_group 582 ))

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\planning\network.py:558, in Network.createsource(self, datatype, id, stepid, resources, nodegroup) 557 resources = resources or ResourceLimit() --> 558 sourcenode = SourceNode(datatype=datatype, id=id_, parent=self, resource_limits=resources, nodegroup=nodegroup) 559 self.add_node(source_node)

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\planning\node.py:1153, in SourceNode.init(self, datatype, id_, parent, resource_limits, nodegroup) 1135 """ 1136 Instantiation of the SourceNode. 1137 (...) 1151 >>> source = network.createsource(datatype=types['ITKImageFile'], id='sourceN') 1152 """ -> 1153 tool = resources.tools['fastr/Source:1.0', '1.0'] 1155 super(SourceNode, self).init(tool, id_, parent=parent, resource_limits=resource_limits, nodegroup=nodegroup)

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\plugins\managers\objectmanager.py:65, in ObjectManager.getitem(self, key) 64 new_key = self.keytransform(key) ---> 65 if new_key not in self.data: 66 raise exceptions.FastrObjectUnknownError('Key "{}" (expanded to {}) not found in {}'.format(key, new_key, type(self).name))

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\abc\basemanager.py:64, in BaseManager.data(self) 61 """ 62 The actual data dict underlying this Manager 63 """ ---> 64 self.ensure_loaded() 65 return self._data

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\abc\basemanager.py:72, in BaseManager.ensure_loaded(self) 71 if self._data is None: ---> 72 self.populate()

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\plugins\managers\toolmanager.py:28, in ToolManager.populate(self) 27 def populate(self): ---> 28 super().populate() 29 IOPluginManager.create_ioplugin_tool(self, interfaces=resources.interfaces)

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\abc\basemanager.py:82, in BaseManager.populate(self) 81 if self._path[0] is not None: ---> 82 self._scan_directory(self._path[0], recursive=self._path[1])

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\abc\basemanager.py:300, in BaseManager._scan_directory(self, path, recursive, namespace) 299 for entry in path: --> 300 self._scan_directory(entry, recursive) 301 else:

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\abc\basemanager.py:317, in BaseManager._scan_directory(self, path, recursive, namespace) 316 if recursive: --> 317 self._scan_directory(filepath, recursive, namespace + (filename,)) 318 elif os.path.isfile(filepath) and self.match_filename(filename):

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\abc\basemanager.py:325, in BaseManager._scan_directory(self, path, recursive, namespace) 324 try: --> 325 self._load_item(filepath, namespace=namespace) 326 except Exception as exception:

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\plugins\managers\objectmanager.py:146, in ObjectManager._load_item(self, filepath, namespace) 142 """ 143 Load a Object file and store it in the Manager 144 """ --> 146 obj = load(filepath, cls=self.object_class) 147 object_version = self.get_object_version(obj)

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\abc\serializable.py:387, in load(path, method, cls) 384 if hasattr(cls, 'dataschemafile'): 385 # We just check if dataschemafile existed, but pylint missed that 386 # pylint: disable=no-member --> 387 data = cls.get_serializer().instantiate(data) 389 # Instantiate object

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\abc\serializable.py:278, in Serializable.get_serializer(cls, filename) 277 try: --> 278 cls.SERIALIZERS[filename] = jsonschemaparser.getblueprinter(filename) 279 except IOError as err:

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\helpers\jsonschemaparser.py:569, in getblueprinter(uri, blueprint) 568 validator = jsonschema.validators.validator_for(blueprint) --> 569 blueprinter = extend(validator)(uri, blueprint) 570 return blueprinter

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\helpers\jsonschemaparser.py:474, in extend..Blueprinter.init(self, uri, schema, types, resolver, format_checker) 473 if resolver is None: --> 474 resolver = FastrRefResolver(uri, schema) 476 if format_checker is None:

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\fastr\helpers\jsonschemaparser.py:62, in FastrRefResolver.init(self, base_uri, referrer, store, cache_remote, handlers) 61 default_handlers.update(handlers) ---> 62 super(FastrRefResolver, self).init(base_uri, referrer, store, cache_remote, default_handlers)

File D:\Software\Anaconda3\envs\newworc\Lib\site-packages\jsonschema\validators.py:930, in _RefResolver.init(self, base_uri, referrer, store, cache_remote, handlers, urljoin_cache, remote_cache) 927 self.store.update(store) 928 self.store.update( 929 (schema["$id"], schema) --> 930 for schema in store.values() 931 if isinstance(schema, Mapping) and "$id" in schema 932 ) 933 self.store[base_uri] = referrer

AttributeError: 'tuple' object has no attribute 'values'

During handling of the above exception, another exception occurred:

Exception Traceback (most recent call last) Cell In[6], line 2 1 # Run the experiment! ----> 2 experiment.execute()

File E:\Tools\WORC-newpython\WORC\facade\simpleworc.py:69, in _error_bulldozer..dec(*args, **kwargs) 67 except Exception as e: 68 if e.class not in _valid_exceptions: ---> 69 raise unexpected_exception_exception 70 raise e

Exception: An unexpected error has occured, which we have not catched in WORC. Double check your code or make an issue on the WORC github so that we can fix this issue. Please report the actual error raised in your report.

This is my env: alabaster==0.7.16 aniso8601==9.0.1 anyio @ file:///C:/b/abs_847uobe7ea/croot/anyio_1706220224037/work appdirs==1.4.4 argon2-cffi @ file:///opt/conda/conda-bld/argon2-cffi_1645000214183/work argon2-cffi-bindings @ file:///C:/ci_311/argon2-cffi-bindings_1676424443321/work arrow==1.3.0 asttokens @ file:///opt/conda/conda-bld/asttokens_1646925590279/work async-lru @ file:///C:/b/abs_e0hjkvwwb5/croot/async-lru_1699554572212/work attrs @ file:///C:/b/abs_35n0jusce8/croot/attrs_1695717880170/work Babel @ file:///C:/ci_311/babel_1676427169844/work backports.tarfile==1.2.0 baron==0.10.1 beautifulsoup4 @ file:///C:/b/abs_d5wytg_p0w/croot/beautifulsoup4-split_1718029833749/work bidict==0.23.1 bleach @ file:///opt/conda/conda-bld/bleach_1641577558959/work blinker==1.8.2 blosc2==2.7.1 Brotli @ file:///C:/b/abs_3d36mno480/croot/brotli-split_1714483178642/work certifi @ file:///C:/b/abs_7bbxxprxir/croot/certifi_1720453609121/work/certifi cffi @ file:///C:/b/abs_78eb1_vq6z/croot/cffi_1714483206096/work charset-normalizer @ file:///croot/charset-normalizer_1721748349566/work click==8.1.7 click-option-group==0.5.6 colorama @ file:///C:/ci_311/colorama_1676422310965/work comm @ file:///C:/b/abs_67a8058udb/croot/comm_1709322909844/work contourpy==1.2.1 cycler==0.12.1 debugpy @ file:///C:/b/abs_c0y1fjipt2/croot/debugpy_1690906864587/work decorator @ file:///opt/conda/conda-bld/decorator_1643638310831/work defusedxml @ file:///tmp/build/80754af9/defusedxml_1615228127516/work distro==1.3.0 docutils==0.20.1 enum-compat==0.0.3 enum34==1.1.10 executing @ file:///opt/conda/conda-bld/executing_1646925071911/work fastjsonschema @ file:///C:/ci_311/python-fastjsonschema_1679500568724/work fastr==3.3.1 Flask==3.0.3 flask-restplus==0.13.0 fonttools==4.53.1 fqdn==1.5.1 ghalton==0.6.2 gitdb==4.0.11 GitPython==3.1.43 graphviz==0.20.3 h11==0.14.0 httpcore==1.0.5 httpx==0.27.2 idna @ file:///C:/b/abs_aad84bnnw5/croot/idna_1714398896795/work imageio==2.35.1 imagesize==1.4.1 imbalanced-learn==0.12.3 imblearn==0.0 importlib-metadata==6.11.0 ipykernel @ file:///C:/b/abs_c2u94kxcy6/croot/ipykernel_1705933907920/work ipython @ file:///C:/b/abs_7dmlwmkafn/croot/ipython_1718287997280/work ipywidgets @ file:///C:/b/abs_25rsd7yhd4/croot/ipywidgets_1709575117021/work isodate==0.6.1 isoduration==20.11.0 itsdangerous==2.2.0 jaraco.classes==3.4.0 jaraco.context==6.0.1 jaraco.functools==4.0.2 jedi @ file:///C:/b/abs_1b8kmj7rrm/croot/jedi_1721058359741/work Jinja2 @ file:///C:/b/abs_92fccttino/croot/jinja2_1716993447201/work joblib==1.4.2 json5==0.9.25 jsonpickle==3.2.2 jsonpointer==3.0.0 jsonschema==3.2.0 jsonschema-specifications==2023.12.1 jupyter @ file:///C:/b/abs_4e102rc6e5/croot/jupyter_1707947170513/work jupyter-console @ file:///C:/b/abs_82xaa6i2y4/croot/jupyter_console_1680000189372/work jupyter-events @ file:///C:/b/abs_c2m9s5b5m5/croot/jupyter_events_1718738115254/work jupyter-lsp @ file:///C:/b/abs_ecle3em9d4/croot/jupyter-lsp-meta_1699978291372/work jupyter_client @ file:///C:/b/abs_a6h3c8hfdq/croot/jupyter_client_1699455939372/work jupyter_core @ file:///C:/b/abs_beftpbuevw/croot/jupyter_core_1718818307097/work jupyter_server @ file:///C:/b/abs_9a333nh6yu/croot/jupyter_server_1718827092223/work jupyter_server_terminals @ file:///C:/b/abs_ec0dq4b50j/croot/jupyter_server_terminals_1686870763512/work jupyterlab @ file:///C:/b/abs_43venm28fu/croot/jupyterlab_1706802651134/work jupyterlab-pygments @ file:///tmp/build/80754af9/jupyterlab_pygments_1601490720602/work jupyterlab-widgets @ file:///C:/b/abs_62picw9xos/croot/jupyterlab_widgets_1709323131962/work jupyterlab_server @ file:///C:/b/abs_e08i7qn9m8/croot/jupyterlab_server_1699555481806/work keyring==25.3.0 keyrings.alt==5.0.2 kiwisolver==1.4.5 lazy_loader==0.4 lxml==5.3.0 MarkupSafe @ file:///C:/b/absecfdqh67b/croot/markupsafe_1704206030535/work matplotlib==3.7.0 matplotlib-inline @ file:///C:/ci_311/matplotlib-inline_1676425798036/work mistune @ file:///C:/ci_311/mistune_1676425111783/work more-itertools==10.4.0 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 nbclient==0.10.0 nbconvert @ file:///C:/b/abs_17p29f_rx4/croot/nbconvert_1699022793097/work nbformat==5.10.4 ndindex==1.8 nest-asyncio @ file:///C:/b/abs_65d6lblmoi/croot/nest-asyncio_1708532721305/work networkx==3.3 notebook @ file:///C:/b/abs_09nvambyty/croot/notebook_1719499424678/work notebook_shim @ file:///C:/b/abs_a5xysln3lb/croot/notebook-shim_1699455926920/work numexpr==2.10.1 numpy==1.26.0 overrides @ file:///C:/b/abs_cfh89c8yf4/croot/overrides_1699371165349/work packaging @ file:///C:/b/abs_c3vlh0z4jw/croot/packaging_1720101866539/work pandas==2.2.2 pandocfilters @ file:///opt/conda/conda-bld/pandocfilters_1643405455980/work parso @ file:///opt/conda/conda-bld/parso_1641458642106/work pillow==10.4.0 platformdirs @ file:///C:/b/abs_b6z_yqw_ii/croot/platformdirs_1692205479426/work ply==3.11 progressbar2==4.4.2 prometheus-client @ file:///C:/ci_311/prometheus_client_1679591942558/work prompt-toolkit @ file:///C:/b/abs_68uwr58ed1/croot/prompt-toolkit_1704404394082/work prov==2.0.1 psutil @ file:///C:/ci_311_rebuilds/psutil_1679005906571/work pure-eval @ file:///opt/conda/conda-bld/pure_eval_1646925070566/work py-cpuinfo==9.0.0 pycparser @ file:///tmp/build/80754af9/pycparser_1636541352034/work pydicom==2.4.4 pydotplus==2.0.2 Pygments @ file:///C:/b/absfay9dpq4n/croot/pygments_1684279990574/work pyparsing==3.1.4 PyQt5==5.15.10 PyQt5-sip @ file:///C:/b/abs_c0pi2mimq3/croot/pyqt-split_1698769125270/work/pyqt_sip pyrsistent==0.20.0 PySocks @ file:///C:/ci_311/pysocks_1676425991111/work python-dateutil==2.8.2 python-json-logger @ file:///C:/b/abs_cblnsm6puj/croot/python-json-logger_1683824130469/work python-utils==3.8.2 pytz @ file:///C:/b/abs_6ap4tsz1ox/croot/pytz_1713974360290/work PyWavelets==1.7.0 pywin32==305.1 pywin32-ctypes==0.2.3 pywinpty @ file:///C:/ci_311/pywinpty_1677707791185/work/target/wheels/pywinpty-2.0.10-cp311-none-win_amd64.whl PyYAML @ file:///C:/b/abs_782o3mbw7z/croot/pyyaml_1698096085010/work pyzmq @ file:///C:/b/abs_89aq69t0up/croot/pyzmq_1705605705281/work qtconsole @ file:///C:/b/abs_03f8rg9vl6/croot/qtconsole_1709231218069/work QtPy @ file:///C:/b/abs_derqu__3p8/croot/qtpy_1700144907661/work rdflib==6.3.2 redbaron==0.9.2 referencing @ file:///C:/b/abs_09f4hj6adf/croot/referencing_1699012097448/work requests @ file:///C:/b/abs_9frifg92q2/croot/requests_1721410901096/work rfc3339-validator @ file:///C:/b/abs_ddfmseb_vm/croot/rfc3339-validator_1683077054906/work rfc3986-validator @ file:///C:/b/abs_6e9azihr8o/croot/rfc3986-validator_1683059049737/work rpds-py @ file:///C:/b/abs_76j4g4la23/croot/rpds-py_1698947348047/work rply==0.7.8 scikit-image==0.24.0 scikit-learn==1.3.0 scipy==1.14.1 Send2Trash @ file:///C:/b/abs_08dh49ew26/croot/send2trash_1699371173324/work shellescape==3.8.1 SimpleITK==2.4.0 sip @ file:///C:/b/abs_edevan3fce/croot/sip_1698675983372/work six @ file:///tmp/build/80754af9/six_1644875935023/work smmap==5.0.1 sniffio @ file:///C:/b/abs3akdewudo/croot/sniffio_1705431337396/work snowballstemmer==2.2.0 soupsieve @ file:///C:/b/abs_bbsvy9t4pl/croot/soupsieve_1696347611357/work Sphinx==7.4.7 sphinx-argparse==0.5.2 sphinx-autodoc-typehints==2.2.3 sphinx-rtd-theme==2.0.0 sphinxcontrib-applehelp==2.0.0 sphinxcontrib-devhelp==2.0.0 sphinxcontrib-htmlhelp==2.1.0 sphinxcontrib-httpdomain==1.8.1 sphinxcontrib-jquery==4.1 sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==2.0.0 sphinxcontrib-serializinghtml==2.0.0 stack-data @ file:///opt/conda/conda-bld/stack_data_1646927590127/work sympy==1.13.2 tables==3.10.1 terminado @ file:///C:/ci_311/terminado_1678228513830/work threadpoolctl==3.5.0 tifffile==2024.8.24 tikzplotlib==0.10.1 tinycss2 @ file:///C:/ci_311/tinycss2_1676425376744/work tornado @ file:///C:/b/abs_7bua0304mj/croot/tornado_1718740122405/work traitlets @ file:///C:/b/abs_bfsnoxl4pq/croot/traitlets_1718227069245/work types-python-dateutil==2.9.0.20240821 typing_extensions @ file:///C:/b/abs_0as9mdbkfl/croot/typing_extensions_1715268906610/work tzdata==2024.1 uri-template==1.3.0 urllib3 @ file:///C:/b/abs_a7hvzm4y95/croot/urllib3_1718912661242/work wcwidth==0.2.13 webcolors==24.8.0 webencodings==0.5.1 websocket-client @ file:///C:/b/abs_5dmnxxoci9/croot/websocket-client_1715878351319/work Werkzeug==3.0.4 widgetsnbextension @ file:///C:/b/absa84ycxud7/croot/widgetsnbextension_1709322945280/work win-inet-pton @ file:///C:/ci_311/win_inet_pton_1676425458225/work WORC==3.7.0 xgboost==2.1.1 xlrd==2.0.1 xnat==0.3.28 yarl==1.9.4 zipp==3.20.1

MStarmans91 / WORC

[BUG] #90

details