Unable to generate Phase Tensor Plot

[roshanmanjitsingh]

I have an MT data file where the entries are in column format. I have converted it into EDI format. For some frequencies, I do have only the tipper data and not the impedance data and vice versa. In the EDI file, I am adding "0.000000E+0" for the component whose value is missing. For example, corresponding to the frequency "2.441406E-05" I don't have the Z information so in the EDI file, I am adding "0.000000E+0" for all the Z components whereas for tipper I am giving the measured value.

In such cases, I am unable to generate the phase tensor plots for the respective sites.

[zhang01GA]

Hi Roshan, @roshanmanjitsingh

Thank you for your enquiry. I will pass the issue to @alkirkby to have a look.

[alkirkby]

Hi @roshanmanjitsingh, I can't seem to reproduce your error. Are you adding 0.000000E+0 to all of the Z fields? You could try using a no-data-value of 1.000000e+32 and setting EMPTY=1.0e+32 in the header. Alternatively, if you could provide your code and edi files I can look into it for you.

[roshanmanjitsingh]

Dear

Thanks for your reply. Please find the attached EDI file and the script that I have been using. I have also applied the changes suggested by you but it doesn't work.

                            Thanks

Best regards Roshan Kumar Singh DAAD Alumnus, 2018-19, (GFZ, Potsdam, Germany) Ph.D. Applied Geophysics Department of Applied Geophysics Indian Institute Of Technology (ISM) Dhanbad, 826004

On Tue, Mar 23, 2021 at 10:04 AM Alison Kirkby @.***> wrote:

Hi @roshanmanjitsingh https://github.com/roshanmanjitsingh, I can't seem to reproduce your error. Are you adding 0.000000E+0 to all of the Z fields? You could try using a no-data-value of 1.000000e+32 and setting EMPTY=1.0e+32 in the header. Alternatively, if you could provide your code and edi files I can look into it for you.

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[alkirkby]

I can't see the files. Can you zip them up and email them to me?

[roshanmanjitsingh]

Dear Alison

Please find the attached edi file and script.

Thanks and regards Roshan Kumar Singh DAAD Alumnus, 2018-19, (GFZ, Potsdam, Germany) Ph.D. Applied Geophysics Department of Applied Geophysics Indian Institute Of Technology (ISM) Dhanbad, 826004

On Wed, Mar 24, 2021 at 4:24 AM Alison Kirkby @.***> wrote:

I can't see the files. Can you zip them up and email them to me?

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[alkirkby]

OK it's not a problem with the edi files it's the script. If you run:

from mtpy.core import mt

edi_file = 'path/to/edifile'

mt_obj = mt.MT(edi_file) pt_obj = mt_obj.plot_mt_response()

It should work. I get a plot like this:

[roshanmanjitsingh]

Dear Alison

I have tried running using your script. I am still facing the same problem.

Please find the following attached files for the script being used by me and the associated error :

Script_and_Error1: Scripts as suggested by you and the error associated Script_and_Error2: Scripts initially used by me and the error associated

Thanks and regards Roshan Kumar Singh DAAD Alumnus, 2018-19, (GFZ, Potsdam, Germany) Ph.D. Applied Geophysics Department of Applied Geophysics Indian Institute Of Technology (ISM) Dhanbad, 826004

On Wed, Mar 24, 2021 at 6:19 AM Alison Kirkby @.***> wrote:

OK it's not a problem with the edi files it's the script. If you run:

from mtpy.core import mt

edi_file = 'path/to/edifile'

mt_obj = mt.MT(edi_file) pt_obj = mt_obj.plot_mt_response(plot_yn='n') pt_obj.plot()

It should work. I get a plot like this: [image: image] https://user-images.githubusercontent.com/5335745/112237470-da46fb00-8c96-11eb-93a2-6d5022bbf9bc.png

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[roshanmanjitsingh]

Dear Alison

I was wandering that the error may be due to any older version of MTpy being used by me.

Thanks and regards Roshan K Singh

On Wed, 24 Mar 2021, 06:59 Roshan manjit Singh, @.***> wrote:

Dear Alison

I have tried running using your script. I am still facing the same problem.

Please find the following attached files for the script being used by me and the associated error :

Script_and_Error1: Scripts as suggested by you and the error associated Script_and_Error2: Scripts initially used by me and the error associated

Thanks and regards Roshan Kumar Singh DAAD Alumnus, 2018-19, (GFZ, Potsdam, Germany) Ph.D. Applied Geophysics Department of Applied Geophysics Indian Institute Of Technology (ISM) Dhanbad, 826004

On Wed, Mar 24, 2021 at 6:19 AM Alison Kirkby @.***> wrote:

OK it's not a problem with the edi files it's the script. If you run:

from mtpy.core import mt

edi_file = 'path/to/edifile'

mt_obj = mt.MT(edi_file) pt_obj = mt_obj.plot_mt_response(plot_yn='n') pt_obj.plot()

It should work. I get a plot like this: [image: image] https://user-images.githubusercontent.com/5335745/112237470-da46fb00-8c96-11eb-93a2-6d5022bbf9bc.png

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[alkirkby]

quite possibly, it is definitely worth pulling the latest version, let me know how you go.

[roshanmanjitsingh]

Dear Alison

I have downloaded the MTpy using the following link https://github.com/MTgeophysics/mtpy/wiki/MTPy-installation-guide-for-Windows-10-and-Ubuntu-18.04

If possible can you please provide me link to download the latest version or the version that you use.

Thanks and regards Roshan

On Thu, 25 Mar 2021, 07:38 Alison Kirkby, @.***> wrote:

quite possibly, it is definitely worth pulling the latest version, let me know how you go.

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[alkirkby]

Following those instructions should get you the latest version. If you navigate to the path where mtpy is installed (e.g. /c/mtpywin/mtpy), make sure the develop branch is checked out, and run git pull, you should have the latest version. If you used pip install mtpy that version is out of date.

[roshanmanjitsingh]

Dear Alison

I have followed your instructions . The MTpy version which I have been using is up to date

Roshan Kumar Singh

On Thu, Mar 25, 2021 at 8:31 AM Alison Kirkby @.***> wrote:

Following those instructions should get you the latest version. If you navigate to the path where mtpy is installed (e.g. /c/mtpywin/mtpy), make sure the develop branch is checked out, and run git pull, you should have the latest version. If you used pip install mtpy that version is out of date.

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[alkirkby]

Hmm It's really hard to debug as I can't reproduce the error, it works fine for me. How are you running the script (e.g. jupyter notebook, spyder, or commandline)? and what version of matplotlib are you using? I have matplotlib=3.2.1 (you can get a list of installed packages and versions by running pip freeze) and I am running it in spyder

[roshanmanjitsingh]

Dear Alison

I am running on Jupiter Notebook. I have matplotlib=3.3.4.

Regards Roshan

On Fri, 26 Mar 2021, 02:41 Alison Kirkby, @.***> wrote:

Hmm It's really hard to debug as I can't reproduce the error, it works fine for me. How are you running the script (e.g. jupyter notebook, spyder, or commandline)? and what version of matplotlib are you using? I have matplotlib=3.2.1 (you can get a list of installed packages and versions by running pip freeze) and I am running it in spyder

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[alkirkby]

I'm running out of suggestions I'm sorry, @zhang01GA do you have any ideas? The only other things I can suggest are:

• make sure you have the mtpy environment active in Anaconda
• if that doesn't help try running it as a script directly in a command prompt (ensuring the mtpy environment is active)

[roshanmanjitsingh]

Dear Alison

For the edi file without any empty entries I have been able to generate the phase tensor plots. It is only with the edi files having some empty entries i am facing difficulties.

Which python version you have? The python version that I am using is 3.7.1.

Best regards Roshan

On Fri, 26 Mar 2021, 09:07 Alison Kirkby, @.***> wrote:

I'm running out of suggestions I'm sorry, @zhang01GA https://github.com/zhang01GA do you have any ideas? The only other things I can suggest are:

• make sure you have the mtpy environment active in Anaconda
• if that doesn't help try running it as a script directly in a command prompt (ensuring the mtpy environment is active)

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[zhang01GA]

@alkirkby @roshanmanjitsingh , we have a new developer @snazzybloke (Ante Bilic) who can start looking into this problem. I will provide assistance as required

[roshanmanjitsingh]

Thank you Fei for having @snazzybloke https://github.com/snazzybloke (Ante Bilic) to look into the problem.

On Tue, 30 Mar 2021, 04:27 Fei Zhang, @.***> wrote:

@alkirkby https://github.com/alkirkby @roshanmanjitsingh https://github.com/roshanmanjitsingh , we have a new developer @snazzybloke https://github.com/snazzybloke (Ante Bilic) who can start looking into this problem. I will provide assistance as required

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[snazzybloke]

Hi @roshanmanjitsingh, I would need to know your whole environment to reproduce and investigate the issue. Would you be able share your package versions? (try perhaps pip freeze > requriements.txt)

[roshanmanjitsingh]

Dear @snazzybloke https://github.com/snazzybloke

Please find the attached files.

On Tue, Mar 30, 2021 at 11:59 AM Ante Bilic @.***> wrote:

Hi @roshanmanjitsingh https://github.com/roshanmanjitsingh, I would need to know your whole environment to reproduce and investigate the issue. Would you be able share your package versions? (try perhaps pip freeze > requriements.txt)

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file:///home/ktietz/src/ci_mi/defusedxml_1612808095953/work docutils==0.16 entrypoints==0.3 Fiona==1.8.13.post1 future==0.18.2 GDAL==3.0.2 geopandas @ file:///tmp/build/80754af9/geopandas_1594937497867/work idna @ file:///home/linux1/recipes/ci/idna_1610986105248/work imagesize @ file:///home/ktietz/src/ci/imagesize_1611921604382/work importlib-metadata @ file:///tmp/build/80754af9/importlib-metadata_1602276842396/work ipykernel @ file:///C:/ci/ipykernel_1596208728219/work/dist/ipykernel-5.3.4-py3-none-any.whl ipython @ file:///C:/ci/ipython_1614616717881/work ipython-genutils @ file:///tmp/build/80754af9/ipython_genutils_1606773439826/work isort @ file:///tmp/build/80754af9/isort_1616355431277/work jedi==0.17.0 Jinja2 @ file:///tmp/build/80754af9/jinja2_1612213139570/work jsonschema @ file:///tmp/build/80754af9/jsonschema_1602607155483/work jupyter-client @ file:///tmp/build/80754af9/jupyter_client_1601311786391/work jupyter-core @ file:///C:/ci/jupyter_core_1612213516947/work 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This file may be used to create an environment using:

$ conda create --name --file

platform: win-64

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[snazzybloke]

Hi @roshanmanjitsingh,

I've run into the same errors as you by running Alison's script shown above. The issue was matplotlib. My version was 3.4.1 and after replacing it with 3.2.1: pip install matplotlib==3.2.1 the script reproduces Alison's plots without a hiccup.

So, as a quick fix I suggest that you set up the virtual environment for mtpy to use the 3.2.1 matplotlib ver. Clearly, a better solution is needed that does not crash with newer versions.

Ante

[snazzybloke]

@roshanmanjitsingh, further to my comment above, even with the newer matplotlib version you should still be able to produce the plots simply by running your script from the command line, e.g.: _> python scriptname.py

The error I see is between IPython and new matplotlib, which makes it impossible for either spyder or jupyter to render the plot object (since they both rely on IPython directly and/or via ipykernel).

[roshanmanjitsingh]

Dear @snazzybloke https://github.com/snazzybloke Thanks for giving time to my problem. I will try to follow your recommendation and then get back to you

On Sun, Apr 4, 2021 at 2:32 PM Ante Bilic @.***> wrote:

@roshanmanjitsingh https://github.com/roshanmanjitsingh, further to my comment above, even with the newer matplotlib version you should still be able to produce the plots simply by running your script from the command line, e.g.: > python script_name.py

The error I see is between IPython and new matplotlib, which makes it impossible for either spyder or jupyter to render the plot object (since they both rely on IPython directly and/or via ipykernel).

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/MTgeophysics/mtpy/issues/139#issuecomment-812999269, or unsubscribe https://github.com/notifications/unsubscribe-auth/ASUZUYEE7ET4AWYSQPNSVFDTHATJTANCNFSM4ZIUW7MA .

[roshanmanjitsingh]

Dear @snazzybloke https://github.com/snazzybloke I tried running the script using your recommendation and it executed successfully. Thank you very much. Thanks to all.

Roshan Kumar Singh

On Mon, Apr 5, 2021 at 1:29 AM Roshan manjit Singh < @.***> wrote:

Dear @snazzybloke https://github.com/snazzybloke Thanks for giving time to my problem. I will try to follow your recommendation and then get back to you

On Sun, Apr 4, 2021 at 2:32 PM Ante Bilic @.***> wrote:

@roshanmanjitsingh https://github.com/roshanmanjitsingh, further to my comment above, even with the newer matplotlib version you should still be able to produce the plots simply by running your script from the command line, e.g.: > python script_name.py

The error I see is between IPython and new matplotlib, which makes it impossible for either spyder or jupyter to render the plot object (since they both rely on IPython directly and/or via ipykernel).

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/MTgeophysics/mtpy/issues/139#issuecomment-812999269, or unsubscribe https://github.com/notifications/unsubscribe-auth/ASUZUYEE7ET4AWYSQPNSVFDTHATJTANCNFSM4ZIUW7MA .