search

MTgeophysics / mtpy

Python toolbox for standard Magnetotelluric (MT) data analysis
GNU General Public License v3.0
145 stars 66 forks source link

Instalation #90

Closed pestaindra closed 5 years ago

pestaindra commented 5 years ago

I have the problem in instalation ... I have installed PyProj, but it did not worrk..

like this... File "C:\mtpywin\mtpy\mtpy\utils__init__.py", line 13, in raise RuntimeError("Either GDAL or PyProj must be installed") RuntimeError: Either GDAL or PyProj must be installed****

May some one can help me step by step...

alkirkby commented 5 years ago

Hello, Not sure at this stage - Just to get a bit more info about the problem so I can hopefully get to the bottom of it - Did you follow the installation instructions on our wiki page or using pip install mtpy? Or neither? Are you using anaconda? Windows or Linux? Finally, can you type conda list (or pip freeze if you are not using anaconda) and copy and paste the result into this thread? That way I can see if pyproj has successfully installed.

pestaindra commented 5 years ago

Hello .. thank for your respon . I followed the installation instructions from wiki page. my compter is windows 10. HP@DESKTOP-GPK0H9J MINGW64 /c/mtpywin/mtpy $ conda list WARNING: The conda.compat module is deprecated and will be removed in a future release.

packages in environment at C:\mtpywin\anaconda2:

#

Name Version Build Channel

_ipyw_jlab_nb_ext_conf 0.1.0 py27_0 alabaster 0.7.12 py27_0 anaconda 2019.03 py27_0 anaconda-client 1.7.2 py27_0 anaconda-navigator 1.9.7 py27_0 anaconda-project 0.8.2 py27_0 asn1crypto 0.24.0 py27_0 astroid 1.6.5 py27_0 astropy 2.0.9 py27hc997a72_0 atomicwrites 1.3.0 py27_1 attrs 19.1.0 py27_1 babel 2.6.0 py27_0 backports 1.0 py27_1 backports.functools_lru_cache 1.5 py27_1 backports.os 0.1.1 py27_0 backports.shutil_get_terminal_size 1.0.0 py27_2 backports.shutil_which 3.5.2 py27_0 backports_abc 0.5 py27h0ec6b72_0 beautifulsoup4 4.7.1 py27_1 bitarray 0.8.3 py27h0c8e037_0 bkcharts 0.2 py27h92b6de3_0 blas 1.0 mkl bleach 3.1.0 py27_0 blosc 1.15.0 hc65f11a_0 bokeh 1.0.4 py27_0 boto 2.49.0 py27_0 bottleneck 1.2.1 py27hc997a72_1 bzip2 1.0.6 h0c8e037_5 ca-certificates 2019.1.23 0 cdecimal 2.3 py27h0c8e037_3 certifi 2019.3.9 py27_0 cffi 1.12.2 py27hcfb25f9_1 chardet 3.0.4 py27_1 click 7.0 py27_0 cloudpickle 0.8.0 py27_0 clyent 1.2.2 py27_1 colorama 0.4.1 py27_0 comtypes 1.1.7 py27_0 conda 4.6.11 py27_0 conda-build 3.17.8 py27_0 conda-env 2.6.0 1 conda-verify 3.1.1 py27_0 configparser 3.7.3 py27_1 console_shortcut 0.1.1 3 contextlib2 0.5.5 py27h42efda5_0 cryptography 2.4.2 py27hc64555f_0 curl 7.64.0 h7a46e7a_2 cycler 0.10.0 py27h59acbbf_0 cython 0.29.6 py27hc56fc5f_0 cytoolz 0.9.0.1 py27h0c8e037_1 dask 1.1.4 py27_1 dask-core 1.1.4 py27_1 decorator 4.4.0 py27_1 defusedxml 0.5.0 py27_1 distributed 1.26.0 py27_1 docutils 0.14 py27h8652d09_0 entrypoints 0.3 py27_0 enum34 1.1.6 py27_1 et_xmlfile 1.0.1 py27h1de5d23_0 fastcache 1.0.2 py27h0c8e037_2 filelock 3.0.10 py27_0 flask 1.0.2 py27_1 freetype 2.9.1 h4d385ea_1 funcsigs 1.0.2 py27h8885ae1_0 functools32 3.2.3.2 py27_1 future 0.17.1 py27_0 futures 3.2.0 py27_0 get_terminal_size 1.0.0 h38e98db_0 gevent 1.4.0 py27h0c8e037_0 glob2 0.6 py27_1 greenlet 0.4.15 py27h0c8e037_0 grin 1.2.1 py27_4 h5py 2.9.0 py27hb721d18_0 hdf5 1.10.4 h530792d_0 heapdict 1.0.0 py27_2 html5lib 1.0.1 py27_0 icc_rt 2019.0.0 h0cc432a_1 icu 58.2 h2aa20d9_1 idna 2.8 py27_0 imageio 2.5.0 py27_0 imagesize 1.1.0 py27_0 importlib_metadata 0.8 py27_0 intel-openmp 2019.3 203 ipaddress 1.0.22 py27_0 ipykernel 4.10.0 py27_0 ipython 5.8.0 py27_0 ipython_genutils 0.2.0 py27hbe997df_0 ipywidgets 7.4.2 py27_0 isort 4.3.16 py27_0 itsdangerous 1.1.0 py27_0 jdcal 1.4 py27_0 jedi 0.13.3 py27_0 jinja2 2.10 py27_0 jpeg 9b ha175dff_2 jsonschema 3.0.1 py27_0 jupyter 1.0.0 py27_7 jupyter_client 5.2.4 py27_0 jupyter_console 5.2.0 py27_1 jupyter_core 4.4.0 py27_0 jupyterlab 0.33.11 py27_0 jupyterlab_launcher 0.11.2 py27h28b3542_0 keyring 18.0.0 py27_0 kiwisolver 1.0.1 py27hc56fc5f_0 krb5 1.16.1 hb4d044e_6 lazy-object-proxy 1.3.1 py27h0c8e037_2 libarchive 3.3.3 h96cdc4e_0 libcurl 7.64.0 h7a46e7a_2 libiconv 1.15 hda2e4ec_7 libpng 1.6.36 h7a46e7a_0 libsodium 1.0.16 h8b3e59e_0 libssh2 1.8.0 h77a7533_4 libtiff 4.0.10 h1c3b264_2 libxml2 2.9.9 h325896a_0 libxslt 1.1.33 h803002f_0 linecache2 1.0.0 py27_0 llvmlite 0.28.0 py27hc56fc5f_0 locket 0.2.0 py27h1ca288a_1 lxml 4.3.2 py27h31b8cb8_0 lz4-c 1.8.1.2 h3cc03e0_0 lzo 2.10 h0bb7fe3_2 m2w64-gcc-libgfortran 5.3.0 6 m2w64-gcc-libs 5.3.0 7 m2w64-gcc-libs-core 5.3.0 7 m2w64-gmp 6.1.0 2 m2w64-libwinpthread-git 5.0.0.4634.697f757 2 markupsafe 1.1.1 py27h0c8e037_0 matplotlib 2.2.3 py27h263d877_0 mccabe 0.6.1 py27_1 menuinst 1.4.16 py27h0c8e037_0 mistune 0.8.4 py27h0c8e037_0 mkl 2019.3 203 mkl-service 1.1.2 py27h0b88c2a_5 mkl_fft 1.0.10 py27h44c1dab_0 more-itertools 5.0.0 py27_0 mpmath 1.1.0 py27_0 msgpack-python 0.6.1 py27hdc96acc_1 msys2-conda-epoch 20160418 1 multipledispatch 0.6.0 py27_0 navigator-updater 0.2.1 py27_0 nbconvert 5.4.1 py27_3 nbformat 4.4.0 py27hf49b375_0 networkx 2.2 py27_1 nltk 3.4 py27_1 nose 1.3.7 py27_2 notebook 5.7.8 py27_0 numba 0.43.1 py27h39f3610_0 numexpr 2.6.9 py27haac76bc_0 numpy 1.16.2 py27h5fc8d92_0 numpy-base 1.16.2 py27hb1d0314_0 numpydoc 0.8.0 py27_0 olefile 0.46 py27_0 openpyxl 2.6.1 py27_1 openssl 1.0.2r h0c8e037_0 packaging 19.0 py27_0 pandas 0.24.2 py27hc56fc5f_0 pandoc 2.2.3.2 0 pandocfilters 1.4.2 py27_1 parso 0.3.4 py27_0 partd 0.3.10 py27_1 path.py 11.5.0 py27_0 pathlib2 2.3.3 py27_0 patsy 0.5.1 py27_0 pep8 1.7.1 py27_0 pickleshare 0.7.5 py27_0 pillow 5.4.1 py27h5b88493_0 pip 19.0.3 py27_0 pkginfo 1.5.0.1 py27_0 pluggy 0.9.0 py27_0 ply 3.11 py27_0 powershell_shortcut 0.0.1 2 prometheus_client 0.6.0 py27_0 prompt_toolkit 1.0.15 py27h3a8ec6a_0 psutil 5.5.0 py27h0c8e037_0 py 1.8.0 py27_0 pycodestyle 2.5.0 py27_0 pycosat 0.6.3 py27h0c8e037_0 pycparser 2.19 py27_0 pycrypto 2.6.1 py27h0c8e037_9 pycurl 7.43.0.2 py27hc64555f_0 pyflakes 2.1.1 py27_0 pygments 2.3.1 py27_0 pylint 1.9.2 py27_0 pyodbc 4.0.26 py27hc56fc5f_0 pyopenssl 19.0.0 py27_0 pyparsing 2.3.1 py27_0 pyqt 5.6.0 py27h6e61f57_6 pyreadline 2.1 py27_1 pyrsistent 0.14.11 py27h0c8e037_0 pysocks 1.6.8 py27_0 pytables 3.5.1 py27h6a9b274_0 pytest 4.3.1 py27_0 python 2.7.16 hcb6e200_0 python-dateutil 2.8.0 py27_0 python-libarchive-c 2.8 py27_6 pytz 2018.9 py27_0 pywavelets 1.0.2 py27hc997a72_0 pywin32 223 py27h0c8e037_1 pywinpty 0.5.5 py27_1000 pyyaml 5.1 py27h0c8e037_0 pyzmq 18.0.0 py27hc56fc5f_0 qt 5.6.2 vc9hc26998b_12 qtawesome 0.5.7 py27_1 qtconsole 4.4.3 py27_0 qtpy 1.7.0 py27_1 requests 2.21.0 py27_0 rope 0.12.0 py27_0 ruamel_yaml 0.15.46 py27h0c8e037_0 scandir 1.10.0 py27h0c8e037_0 scikit-image 0.14.2 py27hc56fc5f_0 scikit-learn 0.20.3 py27hf381715_0 scipy 1.2.1 py27h4c3ab11_0 seaborn 0.9.0 py27_0 send2trash 1.5.0 py27_0 setuptools 40.8.0 py27_0 simplegeneric 0.8.1 py27_2 singledispatch 3.4.0.3 py27h3f9d112_0 sip 4.18.1 py27hc56fc5f_2 six 1.12.0 py27_0 snappy 1.1.7 he46498f_3 snowballstemmer 1.2.1 py27h28d3bf7_0 sortedcollections 1.1.2 py27_0 sortedcontainers 2.1.0 py27_0 soupsieve 1.8 py27_0 sphinx 1.8.5 py27_0 sphinxcontrib 1.0 py27_1 sphinxcontrib-websupport 1.1.0 py27_1 spyder 3.3.3 py27_0 spyder-kernels 0.4.2 py27_0 sqlalchemy 1.3.1 py27h0c8e037_0 sqlite 3.27.2 h0c8e037_0 ssl_match_hostname 3.7.0.1 py27_0 statsmodels 0.9.0 py27hc997a72_0 subprocess32 3.5.3 py27h0c8e037_0 sympy 1.3 py27_0 tblib 1.3.2 py27h8ae915c_0 terminado 0.8.1 py27_1 testpath 0.4.2 py27_0 tk 8.6.8 h0c8e037_0 toolz 0.9.0 py27_0 tornado 5.1.1 py27h0c8e037_0 tqdm 4.31.1 py27_1 traceback2 1.4.0 py27_0 traitlets 4.3.2 py27h1b1b3a5_0 typing 3.6.6 py27_0 unicodecsv 0.14.1 py27h0bf7bb0_0 unittest2 1.1.0 py27_0 urllib3 1.24.1 py27_0 vc 9 h7299396_1 vs2008_runtime 9.00.30729.1 hfaea7d5_1 vs2015_runtime 14.15.26706 h3a45250_0 wcwidth 0.1.7 py27hb1a0d82_0 webencodings 0.5.1 py27_1 werkzeug 0.14.1 py27_0 wheel 0.33.1 py27_0 widgetsnbextension 3.4.2 py27_0 win_inet_pton 1.1.0 py27_0 win_unicode_console 0.5 py27hc037021_0 wincertstore 0.2 py27hf04cefb_0 winpty 0.4.3 4 wrapt 1.11.1 py27h0c8e037_0 xlrd 1.2.0 py27_0 xlsxwriter 1.1.5 py27_0 xlwings 0.15.4 py27_0 xlwt 1.3.0 py27h2271735_0 xz 5.2.4 h3cc03e0_4 yaml 0.1.7 h3e6d941_2 zeromq 4.3.1 h2880e7c_3 zict 0.1.4 py27_0 zipp 0.3.3 py27_1 zlib 1.2.11 h3cc03e0_3 zstd 1.3.7 h1b0e4d7_0

pestaindra commented 5 years ago

I try and run this in jupiter

import required modules

from mtpy.core.mt import MT

result ..

runfile('C:/mtpywin/mtpy/mtpy/init.py', wdir='C:/mtpywin/mtpy/mtpy') Reloaded modules: mtpy.utils.mtpylog, mtpy.utils.decorator Ignore GDAL as it is not working. Will use pyproj Traceback (most recent call last):

File "", line 1, in runfile('C:/mtpywin/mtpy/mtpy/init.py', wdir='C:/mtpywin/mtpy/mtpy')

File "C:\mtpywin\anaconda2\lib\site-packages\spyder_kernels\customize\spydercustomize.py", line 786, in runfile execfile(filename, namespace)

File "C:\mtpywin\anaconda2\lib\site-packages\spyder_kernels\customize\spydercustomize.py", line 95, in execfile exec(compile(scripttext, filename, 'exec'), glob, loc)

File "C:/mtpywin/mtpy/mtpy/init.py", line 3, in from mtpy.utils.mtpylog import MtPyLog

File "C:\mtpywin\mtpy\mtpy__init__.py", line 3, in from mtpy.utils.mtpylog import MtPyLog

File "C:\mtpywin\mtpy\mtpy\utils__init__.py", line 13, in raise RuntimeError("Either GDAL or PyProj must be installed")

RuntimeError: Either GDAL or PyProj must be installed..

this the script line 13 in ..

Check for gdal availability at module level so we don't have to

do this every time a function in gis_tools is being called.

from .decorator import gdal_data_check import os, re import numpy as np

HAS_GDAL = gdal_data_check(None)._gdal_data_found

if (not HAS_GDAL): try: import pyproj except ImportError: raise RuntimeError("Either GDAL or PyProj must be installed")

end try

end if

EPSG_DICT = {} try: import pyproj

epsgfn = os.path.join(pyproj.pyproj_datadir, 'epsg')

f = open(epsgfn, 'r')
lines = f.readlines()
geojunky commented 5 years ago

Hi, it doesn't seem like you have pyproj installed, as it's not showing up in the list produced by 'conda list'. Please check whether you have multiple versions of conda on your computer.

pestaindra commented 5 years ago

sir, can you help me how to install PyProject...

alkirkby commented 5 years ago

please type: conda install pyproj into your git bash terminal.

pestaindra commented 5 years ago

thx sir.. I have installed pyproj but it still didnt work. plis help..

HP@DESKTOP-GPK0H9J MINGW64 /c/mtpywin/mtpy $ conda install pyproj Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done

All requested packages already installed.

HP@DESKTOP-GPK0H9J MINGW64 /c/mtpywin/mtpy $ which pyproj which: no pyproj in (/c/mtpywin/anaconda2:/c/mtpywin/anaconda2/Scripts:/c/mtpywin/anaconda2/Library/bin:/c/Users/HP/bin:/mingw64/bin:/usr/local/bin:/usr/bin:/bin:/mingw64/bin:/usr/bin:/c/Users/HP/bin:/c/WINDOWS/system32:/c/WINDOWS:/c/WINDOWS/System32/Wbem:/c/WINDOWS/System32/WindowsPowerShell/v1.0:/c/Program Files (x86)/IVI Foundation/VISA/WinNT/Bin:/c/Program Files/IVI Foundation/VISA/Win64/Bin:/c/Program Files (x86)/IVI Foundation/VISA/WinNT/Bin:/c/Program Files/MATLAB/R2017b/runtime/win64:/c/Program Files/MATLAB/R2017b/bin:/c/Program Files/MiKTeX 2.9/miktex/bin/x64:/c/WINDOWS/system32:/c/WINDOWS:/c/WINDOWS/System32/Wbem:/c/WINDOWS/System32/WindowsPowerShell/v1.0:/c/WINDOWS/System32/OpenSSH:/c/Program Files/Microsoft VS Code/bin:/c/MinGW/bin:/c/Users/HP/AppData/Local/Programs/Python/Python37/Scripts:/c/Users/HP/AppData/Local/Programs/Python/Python37:C: C/BIN:/c/Users/HP/AppData/Local/Microsoft/WindowsApps:/usr/bin/vendor_perl:/usr/bin/core_perl)

zhang01GA commented 5 years ago

Hi, could you please try use the command "pip show pyproj" to see if you got output like the following:

$ pip show pyproj Name: pyproj Version: 2.2.0 Summary: Python interface to PROJ.4 library Home-page: https://github.com/pyproj4/pyproj Author: Jeff Whitaker Author-email: jeffrey.s.whitaker@noaa.gov License: OSI Approved Location: e:\miniconda3\lib\site-packages Requires: Required-by: mtpy, geopandas

pestaindra commented 5 years ago

Like this sir....

HP@DESKTOP-GPK0H9J MINGW64 /c/mtpywin/mtpy $ pip show pyproj DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. Name: pyproj Version: 1.9.6 Summary: Python interface to PROJ.4 library Home-page: https://github.com/jswhit/pyproj Author: Jeff Whitaker Author-email: jeffrey.s.whitaker@noaa.gov License: OSI Approved Location: c:\mtpywin\anaconda2\lib\site-packages Requires: Required-by:

zhang01GA commented 5 years ago

It means that pyproj 1.9.6 is installed.

Try to use mtpy now.

pestaindra commented 5 years ago

I tryed this in spyder.. from mtpy.core.mt import MT

and result.. runfile('C:/Users/HP/.spyder/temp.py', wdir='C:/Users/HP/.spyder') ERROR:mtpy.utils.decorator:GDAL_DATA is set to: C:/mtpywin/anaconda2/Library/share/gdal, but the path does not exist. ERROR:mtpy.utils.decorator:GDAL_DATA is set to: C:/mtpywin/anaconda2/Library/share/gdal, but the path does not exist. ERROR:mtpy.utils.decorator:GDAL_DATA is set to: C:/mtpywin/anaconda2/Library/share/gdal, but the path does not exist. Ignore GDAL as it is not working. Will use pyproj Ignore GDAL as it is not working. Will use pyproj Ignore GDAL as it is not working. Will use pyproj

zhang01GA commented 5 years ago

This is not a stop-show. you can try to use some example scripts, such as plot_edis.py

pestaindra commented 5 years ago

it's work ...

Thank alot