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MWSchmid / Ngou-et-al.-2022

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Request for C3F hmm model #1

Open jkfo002 opened 1 year ago

jkfo002 commented 1 year ago

Hi,

Recently, I have read your article "Concerted expansion and contraction of immune receptor gene repertoires in plant genomes" in Nature Plant. It's really a brilliant research!

I noticed that the C3F hmm model was built in this paper, would you mind release this model or send me a copy of this hmm model?

Anyway, wish you have a nice day!

MWSchmid commented 1 year ago

Hi

I attached two models, one is just the C3 domain, the other C3F. I'd personally use C3 as the part behind is less conserved and you may miss a good match (i.e., take C3 match and everything up to the end or kinase domain).

C3_and_C3F_HMM.zip

Best

jkfo002 commented 1 year ago

I'm very appreciate for your reply and kindly sharing ! Thank you very much !