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MWSchmid / Rcount

Rcount: simple and flexible RNA-Seq read counting
GNU General Public License v3.0
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Command Line version #4

Open demis001 opened 7 years ago

demis001 commented 7 years ago

@MWSchmid

I want to incorporate the Rcount into one of my CLI application, do you have a minimal command line version without GUI, I don't want to add the QT dependencies. I want something that accept "bam" and give me a proportional count.

Thanks demis001

MWSchmid commented 7 years ago

Hi Dereje

Unfortunately, that's not possible at the moment. I used the Qt libraries all over - even in the data structures. Even without the GUI, you need Qt. The only option I can think of is static linkage of the Qt libraries. It should be relatively simple if one has a static version of the Qt libraries (the default installation has only shared libraries for dynamic linkage). To get them, I would need to build them myself. However, I currently don't have the time to do this :| I could check it earliest after mid-march.

Best regards,

Marc