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MaWeffm / ReCo

ReCo: automated NGS read-counting of single and combinatorial CRISPR gRNAs.
MIT License
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Sample sheet not recognizing sample type 'mpx' #1

Closed cpfeifer58 closed 1 year ago

cpfeifer58 commented 1 year ago

I have copied the sample sheet, updating with my own paths, and am attempting to run Reco but am running into an error:

2023-08-28 11:19:18 INFO: Unique samples: ['pgEX']
2023-08-28 11:19:18 WARNING: {'valid': False, 'message': 'Unknown sample type!'}
2023-08-28 11:19:18 INFO: Running on 1 cores
2023-08-28 11:19:18 INFO: Remove intermediate files: True
2023-08-28 11:19:18 INFO: Found 0 valid samples: []

After which it stops running. I'm attaching the sample sheet as is, with sample paths. Are there other sample type options besides single and mpx? Is it a problem with xlsx format?

Thanks in advance, please let me know if I can include anything else!

ghub_sample_sheet.xlsx

MaWeffm commented 1 year ago

Thank you @cpfeifer58! Please use the sample type 'paired' instead of 'mpx' and let my know if it works. I updated the documentation accordingly.

cpfeifer58 commented 1 year ago

Thanks @MaWeffm! I really appreciate the quick response and it worked!

Unfortunately I've run into another issue but I'll open a new post with that.