Standardize drug IDs (ChEBI, pubchem compound)

MaastrichtU-IDS / d2s-scripts-repository

📜 Transformation scripts to build Data2Services knowledge graphs (SPARQL insert queries, RML mappings, Shell commands).

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Open vemonet opened 5 years ago

vemonet commented 5 years ago

1 bl:Drug entity per chemical Preferred identifier waterfall: ChEBI > PubChem compound Build a lookup service?

Chris also proposes to use inchikey (we then might have multiple chebi per inchikey due to stereo chemistry)

vemonet commented 5 years ago

Use BridgeDB for IDs and PrefixCommons for URIs?