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MaastrichtU-IDS / d2s-scripts-repository

📜 Transformation scripts to build Data2Services knowledge graphs (SPARQL insert queries, RML mappings, Shell commands).
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BioPax to BioLink conversion #2

Open vemonet opened 5 years ago

vemonet commented 5 years ago

Write generic SPARQL queries to transform OWL BioPax in BioLink

For pathwaycommons for example: http://www.pathwaycommons.org/archives/PC2/v10/PathwayCommons10.All.BIOPAX.owl.gz

vemonet commented 5 years ago

Pathwaycommons: For some identifiers.org/uniprot it seems to take a lot of different value for bl:id from different subcomponents (due to the entityReference thing, that references a larger entity): http://graphdb.dumontierlab.com/resource?uri=http:%2F%2Fidentifiers.org%2Funiprot%2FQ9Y4U1

vemonet commented 5 years ago

Started here: https://github.com/MaastrichtU-IDS/data2services-transform-repository/tree/master/sparql/insert-biolink/biopax-pathwaycommons