MaastrichtU-IDS / semanticscience

The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.
https://sio.semanticscience.org
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sio-subset-labels missing #103

Open jpmccu opened 1 year ago

jpmccu commented 1 year ago

I'm not sure if this was intentional, but the labels subset is missing from github and the redirect from semanticscience.org still points to the orginal github repo. Please update or advise, we still have projects that aren't ready for numeric URIs.

micheldumontier commented 1 year ago

We now have two files for labels, one corresponding to dash labels and the other to camelcase labels:

https://semanticscience.org/ontology/sio-subset-dash-labels.owl https://semanticscience.org/ontology/sio-subset-camelcase-label.owl

will that work?

jpmccu commented 1 year ago

Yes, but we will need to update imports in a few ontologies.

On Mon, Aug 21, 2023 at 8:11 AM Michel Dumontier @.***> wrote:

We now have two files for labels, one corresponding to dash labels and the other to camelcase labels:

https://semanticscience.org/ontology/sio-subset-dash-labels.owl https://semanticscience.org/ontology/sio-subset-camelcase-label.owl

will that work?

— Reply to this email directly, view it on GitHub https://github.com/MaastrichtU-IDS/semanticscience/issues/103#issuecomment-1686212741, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAETCEOXM2JOAZW5SLNAT7DXWNF7VANCNFSM6AAAAAA3RUHI3Q . You are receiving this because you authored the thread.Message ID: @.***>

-- Jamie McCusker (she/her/hers)

Director, Data Operations Tetherless World Constellation Rensselaer Polytechnic Institute @. @.> http://tw.rpi.edu

k00ni commented 5 months ago

Having the same issue, any news on this?

micheldumontier commented 5 months ago

@k00ni - sorry, can you be more specific what problem you are facing?

k00ni commented 5 months ago

I crawled https://raw.githubusercontent.com/LA3D/ammo/main/development/ontology/ontology.ttl (https://github.com/LA3D/ammo) which references http://semanticscience.org/ontology/sio-subset-labels.owl using owl:import.

Calling http://semanticscience.org/ontology/sio-subset-labels.owl redirects to https://raw.githubusercontent.com/micheldumontier/semanticscience/master/ontology/sio/release/sio-subset-labels.owl, which shows a 404: not found message.

I am not sure if this redirect is outdated/deprecated or still valid, but fails to redirect correctly.

micheldumontier commented 5 months ago

ok folks - i just added back the sio-subset-labels.owl file, which is just a copy of sio-subset-dash-labels.owl

jpmccu commented 5 months ago

We really do still rely on the camelcase labels for a lot of projects. Why are there issues in maintaining it?

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From: Michel Dumontier @.> Sent: Monday, March 25, 2024 10:22:23 AM To: MaastrichtU-IDS/semanticscience @.> Cc: Jamie McCusker @.>; Author @.> Subject: Re: [MaastrichtU-IDS/semanticscience] sio-subset-labels missing (Issue #103)

ok folks - i just added back the sio-subset-labels.owl file, which is just a copy of sio-subset-dash-labels.owl

— Reply to this email directly, view it on GitHubhttps://github.com/MaastrichtU-IDS/semanticscience/issues/103#issuecomment-2018118641, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AAETCEPHVBLU3JQQECVHPBLY2AXJ7AVCNFSM6AAAAAA3RUHI3SVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAMJYGEYTQNRUGE. You are receiving this because you authored the thread.Message ID: @.***>

micheldumontier commented 5 months ago

what are you asking for?

jpmccu commented 5 months ago

We came to an arrangement around 2016 or so to have sio-subset-labels to use "first word capitalized" camelcase labels (MaterialEntity) for class URI local parts and "first word lowercase" (hasComponentPart) for property URI local parts. This is standard notation in many programming languages and matches the conventions used by W3C vocabularies and ontologies.

Thanks, Jamie

On Mon, Mar 25, 2024 at 11:08 AM Michel Dumontier @.***> wrote:

what are you asking for?

— Reply to this email directly, view it on GitHub https://github.com/MaastrichtU-IDS/semanticscience/issues/103#issuecomment-2018226931, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAETCELMODBRGZZYNDUKAMDY2A4YJAVCNFSM6AAAAAA3RUHI3SVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAMJYGIZDMOJTGE . You are receiving this because you authored the thread.Message ID: @.***>

-- Jamie McCusker (she/her/hers)

Research Director Tetherless World Constellation Rensselaer Polytechnic Institute @. @.> http://tw.rpi.edu

micheldumontier commented 5 months ago

do you mind if the file would contain both label types? i also now plan to create a release file that includes all 3 identifier schemes, along with the mappings between them. would you want that as the default labels file?

jpmccu commented 5 months ago

That's probably fine, although "browsing the hierarchy" in Protege probably will look odd.

On Tue, Mar 26, 2024 at 8:37 AM Michel Dumontier @.***> wrote:

do you mind if the file would contain both label types? i also now plan to create a release file that includes all 3 identifier schemes, along with the mappings between them. would you want that as the default labels file?

— Reply to this email directly, view it on GitHub https://github.com/MaastrichtU-IDS/semanticscience/issues/103#issuecomment-2020318008, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAETCEKBXE5WIPYU5VZJJPLY2FMYRAVCNFSM6AAAAAA3RUHI3SVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAMRQGMYTQMBQHA . You are receiving this because you authored the thread.Message ID: @.***>

-- Jamie McCusker (she/her/hers)

Research Director Tetherless World Constellation Rensselaer Polytechnic Institute @. @.> http://tw.rpi.edu