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MaastrichtU-IDS / semanticscience

The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.
https://sio.semanticscience.org
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Questions about some types is SIO supporting? #11

Closed BassamNa closed 8 years ago

BassamNa commented 8 years ago

Hi I have a disease resource rdf and many resources in emr system such as diagnoses and patient, disease for example it has properties (id, name, description, link_to-DOID) I want to make a type for each property, for example id is SIO_000115 and name is SIO_000116. but I don't know what type of link_to-DOID that link me a disease to doid ontology, is SIO_001171 i.e database cross-reference good?

also I want two predicate types (has_diagnoses, has_disease), is SIO support ? thanks

micheldumontier commented 8 years ago

If you want to use SIO in lieu of SKOS, then yes, you can create an instance of a database cross-reference, and use the 'refers-to' property to link the two items.

Michel Dumontier Associate Professor of Medicine (Biomedical Informatics), Stanford University Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group http://dumontierlab.com

On Fri, Dec 25, 2015 at 1:14 PM, BassamNa notifications@github.com wrote:

Hi I have a disease resource rdf, it has (id, name, description, link_to-DOID) I want to make a type for each property, for example id is SIO_000115 and name is SIO_000116 but I don't know what type of link_to-DOID that link me a disease to doid ontology, is SIO_001171 ie database cross-reference good?

also I want two predicate types (has_diagnoses, has_disease), is SIO support ? thanks

— Reply to this email directly or view it on GitHub https://github.com/micheldumontier/semanticscience/issues/11.

BassamNa commented 8 years ago

thanks Michel, is there are properties ("has_disease" for links a patient with disease - also "has_diagnose" for link a patient with it's diagnoses)??? thanks again :)

micheldumontier commented 8 years ago

No - there are no such domain-specific properties in SIO

Michel Dumontier Associate Professor of Medicine (Biomedical Informatics), Stanford University Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group http://dumontierlab.com

On Sat, Dec 26, 2015 at 11:20 AM, BassamNa notifications@github.com wrote:

thanks, is there are properties ("has_disease" for links a patient with disease - also "has_diagnose" for link a patient with it's diagnoses)??? thanks again :)

— Reply to this email directly or view it on GitHub https://github.com/micheldumontier/semanticscience/issues/11#issuecomment-167355486 .

BassamNa commented 8 years ago

thanks :) really sorry about too questions but I'm considering in your ontology :) if most of classes included in SIO and there are a few isn't exist, what advice me create a new or extend a SIO thanks again Mr.Michel

micheldumontier commented 8 years ago

Proposals for new classes are always welcome. If you need more specific relations, then I recommend that you create a new ontology that imports SIO and extends it in the way you see fit.

Michel Dumontier Associate Professor of Medicine (Biomedical Informatics), Stanford University Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group http://dumontierlab.com

On Sat, Dec 26, 2015 at 11:25 AM, BassamNa notifications@github.com wrote:

thanks :) really sorry about too questions but I'm considering in your ontology :) if most of classes included in SIO and there are a few isn't exist, what advice me create a new or extend a SIO thanks again Mr.Michel

— Reply to this email directly or view it on GitHub https://github.com/micheldumontier/semanticscience/issues/11#issuecomment-167355646 .

BassamNa commented 8 years ago

thanks a lot Michel.