search

MaayanLab / L1000toRNAseq

13 stars 0 forks source link

Trained model for inference available? #1

Closed ddomingof closed 1 year ago

ddomingof commented 2 years ago

Hi, Congrats for the publication! I really liked the work. Is the trained model available for inference? I would like to test it myself. Thanks

sxie04 commented 2 years ago

Hi @ddomingof, thank you for your interest.

The final models used for step 1 (L1000 landmark -> RNA-seq landmark) and step 2 (RNA-seq landmark -> RNA-seq full genome) can be found here, which should be a zipped folder with sub-folders containing PyTorch (PTH) files. You should be able to set step1_exp_index = 38 and step2_exp_index = 35 in the scripts/L1000_to_RNAseq.ipynb file in order to run the code.