Heatmap does not look like it is capturing subtypes

MaayanLab / Patient-Cohorts-RNA-Seq-Appyter

Apply patientcohortsEnrichr to TCGA

MIT License

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Heatmap does not look like it is capturing subtypes #3

Closed AviMaayan closed 4 years ago

AviMaayan commented 4 years ago

Selected Glioblastoma and all default setting the red/orange heatmap did not capture subtypes as determined by eye. Make sure to plot the top 1000 highest variance genes.

https://appyters.maayanlab.cloud/tcgaEnrichrViewer/18ff71ab-ea9c-4b0d-a5c3-bcab44e8fd3b/

nicolemoiseyev commented 4 years ago

Improved heat map by clustering both genes and cases; added the heat map in 2 places with 2 different methods for selecting which genes to display